Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773620

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773620


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M247Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000023318 ERP44 endoplasmic reticulum protein 44 3.0000 0.0000
2 ENSG00000119509 INVS inversin 3.0000 0.0000
3 ENSG00000239908 RN7SL75P RNA, 7SL, cytoplasmic 75, pseudogene 3.0000 0.0000
4 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.8295 0.0000
5 ENSG00000204296 TSBP1 testis expressed basic protein 1 2.8074 0.0000
6 ENSG00000228309 LINC01350 long intergenic non-protein coding RNA 1350 2.8074 0.0000
7 ENSG00000229142 HCG4P8 HLA complex group 4 pseudogene 8 2.8074 0.0000
9 ENSG00000237603 HMGB3P12 high mobility group box 3 pseudogene 12 2.8074 0.0000
10 ENSG00000241939 RN7SL517P RNA, 7SL, cytoplasmic 517, pseudogene 2.8074 0.0000
63119 ENSG00000284375 MIR19B1 microRNA 19b-1 -2.1032 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000278811 LINC00624 long intergenic non-protein coding RNA 624 -2.1073 0.3769
63127 ENSG00000250866 novel transcript -2.1073 0.3769
63126 ENSG00000244067 GSTA2 glutathione S-transferase alpha 2 -2.1073 0.3769
63125 ENSG00000237319 pseudogene similar to part of protein phosphatase 6, catalytic subunit (PPP6C) -2.1073 0.3769
63124 ENSG00000234895 OR52X1P olfactory receptor family 52 subfamily X member 1 pseudogene -2.1073 0.3769
63123 ENSG00000246792 novel transcript -2.1069 0.0000
63122 ENSG00000168267 PTF1A pancreas associated transcription factor 1a -2.1046 0.0000
63121 ENSG00000071073 MGAT4A alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A -2.1039 0.0000
63120 ENSG00000284536 MIR17 microRNA 17 -2.1032 0.0000
63119 ENSG00000284375 MIR19B1 microRNA 19b-1 -2.1032 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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