SHOGoiN Cell Methylome: GSM2773620

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773620


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M247Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000023318 ERP44 endoplasmic reticulum protein 44 3.0000 0.0000
2 ENSG00000119509 INVS inversin 3.0000 0.0000
3 ENSG00000239908 RN7SL75P RNA, 7SL, cytoplasmic 75, pseudogene 3.0000 0.0000
4 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.8295 0.0000
5 ENSG00000204296 TSBP1 testis expressed basic protein 1 2.8074 0.0000
6 ENSG00000228309 LINC01350 long intergenic non-protein coding RNA 1350 2.8074 0.0000
7 ENSG00000229142 HCG4P8 HLA complex group 4 pseudogene 8 2.8074 0.0000
9 ENSG00000237603 HMGB3P12 high mobility group box 3 pseudogene 12 2.8074 0.0000
10 ENSG00000241939 RN7SL517P RNA, 7SL, cytoplasmic 517, pseudogene 2.8074 0.0000
63332 ENSG00000169509 CRCT1 cysteine rich C-terminal 1 -2.2363 0.0104

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63340 ENSG00000234745 HLA-B major histocompatibility complex, class I, B -2.2414 0.1490
63339 ENSG00000231219 PRAMEF32P PRAME family member 32, pseudogene -2.2414 0.1490
63338 ENSG00000151553 FAM160B1 family with sequence similarity 160 member B1 -2.2414 0.1490
63337 ENSG00000122223 CD244 CD244 molecule -2.2414 0.1490
63336 ENSG00000150456 EEF1AKMT1 EEF1A lysine methyltransferase 1 -2.2403 0.0505
63335 ENSG00000143028 SYPL2 synaptophysin like 2 -2.2398 0.0000
63334 ENSG00000144028 SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 -2.2384 0.0001
63333 ENSG00000186207 LCE5A late cornified envelope 5A -2.2363 0.0104
63332 ENSG00000169509 CRCT1 cysteine rich C-terminal 1 -2.2363 0.0104
10 ENSG00000241939 RN7SL517P RNA, 7SL, cytoplasmic 517, pseudogene 2.8074 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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