SHOGoiN Cell Methylome: GSM2773621

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773621


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M248Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202609 MIR488 microRNA 488 3.4594 0.0000
2 ENSG00000206812 RNU6-38P RNA, U6 small nuclear 38, pseudogene 3.3219 0.0000
3 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 3.3219 0.0000
4 ENSG00000214194 SMIM30 small integral membrane protein 30 3.1699 0.0000
5 ENSG00000250791 novel transcript 3.1490 0.0000
6 ENSG00000259418 novel transcript, antisense to SORD 3.0340 0.0000
7 ENSG00000230643 chromosome 10 open reading frame 57 (C10orf57) pseudogene 3.0000 0.0000
8 ENSG00000238697 RNU6-261P RNA, U6 small nuclear 261, pseudogene 3.0000 0.0000
9 ENSG00000257504 LINC02297 long intergenic non-protein coding RNA 2297 3.0000 0.0000
10 ENSG00000257644 fatty acyl CoA reductase 2 (FAR2) pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223138 RNA5SP450 RNA, 5S ribosomal pseudogene 450 -2.5458 0.0000
63340 ENSG00000152192 POU4F1 POU class 4 homeobox 1 -2.5420 0.0000
63339 ENSG00000234753 FOXP4-AS1 FOXP4 antisense RNA 1 -2.5415 0.0000
63338 ENSG00000156381 ANKRD9 ankyrin repeat domain 9 -2.5414 0.0000
63337 ENSG00000200624 RNA5S6 RNA, 5S ribosomal 6 -2.5413 0.0000
63336 ENSG00000257165 novel transcript -2.5411 0.0270
63335 ENSG00000255285 novel pseudogene -2.5407 0.0000
63334 ENSG00000218014 KRT19P1 keratin 19 pseudogene 1 -2.5406 0.0000
63333 ENSG00000242561 ATP5MGP5 ATP synthase membrane subunit g pseudogene 5 -2.5392 0.0000
63332 ENSG00000185985 SLITRK2 SLIT and NTRK like family member 2 -2.5388 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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