SHOGoiN Cell Methylome: GSM2773622

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773622


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M249Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 3.3590 0.0000
2 ENSG00000249119 MTND6P4 MT-ND6 pseudogene 4 3.2621 0.0000
3 ENSG00000204361 NXPE2 neurexophilin and PC-esterase domain family member 2 2.5850 0.0002
4 ENSG00000231516 CBX1P5 chromobox 1 pseudogene 5 2.5850 0.0002
5 ENSG00000241926 MTCO1P55 MT-CO1 pseudogene 55 2.5850 0.0000
6 ENSG00000244169 RN7SL120P RNA, 7SL, cytoplasmic 120, pseudogene 2.5850 0.0002
7 ENSG00000254009 IGKV2D-38 immunoglobulin kappa variable 2D-38 (pseudogene) 2.5850 0.0002
8 ENSG00000182287 AP1S2 adaptor related protein complex 1 subunit sigma 2 2.4680 0.0000
9 ENSG00000247627 MTND4P12 MT-ND4 pseudogene 12 2.3293 0.0000
10 ENSG00000263963 NA 2.3293 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000255000 zinc finger protein pseudogene -1.8000 0.1457
63340 ENSG00000188647 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 -1.8000 0.0027
63339 ENSG00000213862 ribosomal protein L7a (RPL7A) pseudogene -1.7994 0.0089
63338 ENSG00000237266 LINC01810 long intergenic non-protein coding RNA 1810 -1.7979 0.0350
63337 ENSG00000270259 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene -1.7976 0.0000
63336 ENSG00000139168 ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 -1.7974 0.0014
63335 ENSG00000171004 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 -1.7964 0.0000
63334 ENSG00000266876 syntaxin 18 (STX18) pseudogene -1.7955 0.0350
63333 ENSG00000265289 novel transcript, antisense to EFCAB5 -1.7955 0.0350
63332 ENSG00000232263 KRTAP25-1 keratin associated protein 25-1 -1.7955 0.0350

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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