Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773622

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773622


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M249Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 3.3590 0.0000
2 ENSG00000249119 MTND6P4 MT-ND6 pseudogene 4 3.2621 0.0000
3 ENSG00000204361 NXPE2 neurexophilin and PC-esterase domain family member 2 2.5850 0.0002
4 ENSG00000231516 CBX1P5 chromobox 1 pseudogene 5 2.5850 0.0002
5 ENSG00000241926 MTCO1P55 MT-CO1 pseudogene 55 2.5850 0.0000
6 ENSG00000244169 RN7SL120P RNA, 7SL, cytoplasmic 120, pseudogene 2.5850 0.0002
7 ENSG00000254009 IGKV2D-38 immunoglobulin kappa variable 2D-38 (pseudogene) 2.5850 0.0002
8 ENSG00000182287 AP1S2 adaptor related protein complex 1 subunit sigma 2 2.4680 0.0000
9 ENSG00000247627 MTND4P12 MT-ND4 pseudogene 12 2.3293 0.0000
10 ENSG00000263963 NA 2.3293 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000236028 novel transcript -1.7064 0.0000
63127 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -1.7057 0.0000
63126 ENSG00000266072 MIR5693 microRNA 5693 -1.7057 0.0040
63125 ENSG00000149474 KAT14 lysine acetyltransferase 14 -1.7053 0.0000
63124 ENSG00000253263 novel transcript -1.7035 0.0553
63123 ENSG00000206567 novel transcript -1.7035 0.0000
63122 ENSG00000223891 OSER1-DT OSER1 divergent transcript -1.7032 0.0000
63121 ENSG00000151461 UPF2 UPF2 regulator of nonsense mediated mRNA decay -1.7024 0.0726
63120 ENSG00000108878 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 -1.7024 0.0001
63119 ENSG00000169758 TMEM266 transmembrane protein 266 -1.7014 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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