SHOGoiN Cell Methylome: GSM2773623

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773623


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M250Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211815 TRAV36DV7 T cell receptor alpha variable 36/delta variable 7 3.1699 0.0000
2 ENSG00000235845 novel transcript 3.0000 0.0000
3 ENSG00000104327 CALB1 calbindin 1 2.5850 0.0000
4 ENSG00000232499 heterogeneous nuclear ribonucleoprotein A3 (hnRNPA3) pseudogene 2.5850 0.0000
5 ENSG00000232881 RPS10P21 ribosomal protein S10 pseudogene 21 2.5850 0.0000
6 ENSG00000241838 actin, beta (ACTB) pseudogene 2.5850 0.0000
7 ENSG00000250371 novel transcript 2.5850 0.0000
8 ENSG00000236799 LINC02626 long intergenic non-protein coding RNA 2626 2.4973 0.0000
9 ENSG00000086289 EPDR1 ependymin related 1 2.3219 0.0003
10 ENSG00000196266 OR10J3 olfactory receptor family 10 subfamily J member 3 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000279297 novel transcript -2.0000 1.0000
63340 ENSG00000279269 novel transcript -2.0000 0.6139
63339 ENSG00000279050 PWAR1 Prader Willi/Angelman region RNA 1 -2.0000 1.0000
63338 ENSG00000278935 novel transcript -2.0000 1.0000
63337 ENSG00000278829 novel transcript, sense intronic to STAT5B -2.0000 1.0000
63336 ENSG00000278305 novel transcript -2.0000 1.0000
63335 ENSG00000277673 novel zinc finger protein pseudogene -2.0000 1.0000
63334 ENSG00000277506 RN7SL802P RNA, 7SL, cytoplasmic 802, pseudogene -2.0000 1.0000
63333 ENSG00000277486 SAGE3P sarcoma antigen 3, pseudogene -2.0000 1.0000
63332 ENSG00000276304 NA -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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