Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773623

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773623


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M250Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211815 TRAV36DV7 T cell receptor alpha variable 36/delta variable 7 3.1699 0.0000
2 ENSG00000235845 novel transcript 3.0000 0.0000
3 ENSG00000104327 CALB1 calbindin 1 2.5850 0.0000
4 ENSG00000232499 heterogeneous nuclear ribonucleoprotein A3 (hnRNPA3) pseudogene 2.5850 0.0000
5 ENSG00000232881 RPS10P21 ribosomal protein S10 pseudogene 21 2.5850 0.0000
6 ENSG00000241838 actin, beta (ACTB) pseudogene 2.5850 0.0000
7 ENSG00000250371 novel transcript 2.5850 0.0000
8 ENSG00000236799 LINC02626 long intergenic non-protein coding RNA 2626 2.4973 0.0000
9 ENSG00000086289 EPDR1 ependymin related 1 2.3219 0.0003
10 ENSG00000196266 OR10J3 olfactory receptor family 10 subfamily J member 3 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000231887 PRH1 proline rich protein HaeIII subfamily 1 -2.0000 1.0000
63127 ENSG00000231766 MTCO2P5 MT-CO2 pseudogene 5 -2.0000 1.0000
63126 ENSG00000231567 MTND2P19 MT-ND2 pseudogene 19 -2.0000 1.0000
63125 ENSG00000231334 EML6-AS1 EML6 antisense RNA 1 -2.0000 1.0000
63124 ENSG00000231298 MANCR mitotically associated long non coding RNA -2.0000 1.0000
63123 ENSG00000231213 PLSCR5 phospholipid scramblase family member 5 -2.0000 1.0000
63122 ENSG00000230987 DEAH (Asp-Glu-Ala-His) box polypeptide 29 (DHX29) pseudogene -2.0000 1.0000
63121 ENSG00000230781 pseudogene similar to 4933403O08Rik -2.0000 1.0000
63120 ENSG00000230737 novel transcript -2.0000 1.0000
63119 ENSG00000230515 novel transcript -2.0000 0.3838

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...