Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773624
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773624
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M251
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000252620
RNU6ATAC24P
RNA, U6atac small nuclear 24, pseudogene
2.1377
0.0000
2
ENSG00000230009
MTCO2P3
MT-CO2 pseudogene 3
2.0000
0.0030
3
ENSG00000260335
coronin, actin binding protein, 1A (CORO1A) pseudogene
2.0000
0.0030
4
ENSG00000266289
novel transcript
2.0000
0.0030
5
ENSG00000270708
GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene
1.9124
0.0000
6
ENSG00000259798
novel transcript HYDIN
1.8813
0.0000
7
ENSG00000219757
pseudogene similar to part of heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) HNRPD
1.8340
0.0000
8
ENSG00000207399
RNU6-1011P
RNA, U6 small nuclear 1011, pseudogene
1.7925
0.0001
9
ENSG00000232959
novel transcript
1.7925
0.0001
10
ENSG00000254957
activating transcription factor 7 interacting protein 2 (ATF7IP2) pseudogene
1.7925
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000125508
SRMS
src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
-2.0101
0.0000
63127
ENSG00000280222
TEC
-2.0098
0.0000
63126
ENSG00000187566
NHLRC1
NHL repeat containing E3 ubiquitin protein ligase 1
-2.0088
0.0000
63125
ENSG00000231983
LINC00415
long intergenic non-protein coding RNA 415
-2.0088
0.0000
63124
ENSG00000156521
TYSND1
trypsin like peroxisomal matrix peptidase 1
-2.0079
0.0000
63123
ENSG00000198780
FAM169A
family with sequence similarity 169 member A
-2.0077
0.0000
63122
ENSG00000261447
novel transcript
-2.0074
0.0000
63121
ENSG00000184058
TBX1
T-box transcription factor 1
-2.0073
0.0000
63120
ENSG00000267159
novel transcript, antisense to ARID3A
-2.0065
0.0000
63119
ENSG00000126903
SLC10A3
solute carrier family 10 member 3
-2.0065
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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