SHOGoiN Cell Methylome: GSM2773624

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773624


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M251Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252620 RNU6ATAC24P RNA, U6atac small nuclear 24, pseudogene 2.1377 0.0000
2 ENSG00000230009 MTCO2P3 MT-CO2 pseudogene 3 2.0000 0.0030
3 ENSG00000260335 coronin, actin binding protein, 1A (CORO1A) pseudogene 2.0000 0.0030
4 ENSG00000266289 novel transcript 2.0000 0.0030
5 ENSG00000270708 GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene 1.9124 0.0000
6 ENSG00000259798 novel transcript HYDIN 1.8813 0.0000
7 ENSG00000219757 pseudogene similar to part of heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) HNRPD 1.8340 0.0000
8 ENSG00000207399 RNU6-1011P RNA, U6 small nuclear 1011, pseudogene 1.7925 0.0001
9 ENSG00000232959 novel transcript 1.7925 0.0001
10 ENSG00000254957 activating transcription factor 7 interacting protein 2 (ATF7IP2) pseudogene 1.7925 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000146676 PURB purine rich element binding protein B -2.0808 0.0000
63340 ENSG00000282527 novel transcript, antisense to ARL6 -2.0806 0.0000
63339 ENSG00000283967 TAF11L8 TATA-box binding protein associated factor 11 like 8 -2.0805 0.0001
63338 ENSG00000242411 ribosomal protein L13 (RPL13) pseudogene -2.0803 0.0000
63337 ENSG00000148429 USP6NL USP6 N-terminal like -2.0800 0.0000
63336 ENSG00000272853 novel transcript -2.0787 0.0000
63335 ENSG00000259515 novel transcript, antisense to CDC42BPB -2.0786 0.0000
63334 ENSG00000167700 MFSD3 major facilitator superfamily domain containing 3 -2.0785 0.0000
63333 ENSG00000164418 GRIK2 glutamate ionotropic receptor kainate type subunit 2 -2.0785 0.0000
63332 ENSG00000182359 KBTBD3 kelch repeat and BTB domain containing 3 -2.0782 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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