Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773624

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773624


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M251Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252620 RNU6ATAC24P RNA, U6atac small nuclear 24, pseudogene 2.1377 0.0000
2 ENSG00000230009 MTCO2P3 MT-CO2 pseudogene 3 2.0000 0.0030
3 ENSG00000260335 coronin, actin binding protein, 1A (CORO1A) pseudogene 2.0000 0.0030
4 ENSG00000266289 novel transcript 2.0000 0.0030
5 ENSG00000270708 GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene 1.9124 0.0000
6 ENSG00000259798 novel transcript HYDIN 1.8813 0.0000
7 ENSG00000219757 pseudogene similar to part of heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) HNRPD 1.8340 0.0000
8 ENSG00000207399 RNU6-1011P RNA, U6 small nuclear 1011, pseudogene 1.7925 0.0001
9 ENSG00000232959 novel transcript 1.7925 0.0001
10 ENSG00000254957 activating transcription factor 7 interacting protein 2 (ATF7IP2) pseudogene 1.7925 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000125508 SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites -2.0101 0.0000
63127 ENSG00000280222 TEC -2.0098 0.0000
63126 ENSG00000187566 NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 -2.0088 0.0000
63125 ENSG00000231983 LINC00415 long intergenic non-protein coding RNA 415 -2.0088 0.0000
63124 ENSG00000156521 TYSND1 trypsin like peroxisomal matrix peptidase 1 -2.0079 0.0000
63123 ENSG00000198780 FAM169A family with sequence similarity 169 member A -2.0077 0.0000
63122 ENSG00000261447 novel transcript -2.0074 0.0000
63121 ENSG00000184058 TBX1 T-box transcription factor 1 -2.0073 0.0000
63120 ENSG00000267159 novel transcript, antisense to ARID3A -2.0065 0.0000
63119 ENSG00000126903 SLC10A3 solute carrier family 10 member 3 -2.0065 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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