Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773624

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773624 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M251	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000252620	RNU6ATAC24P	RNA, U6atac small nuclear 24, pseudogene	2.1377	0.0000
2	ENSG00000230009	MTCO2P3	MT-CO2 pseudogene 3	2.0000	0.0030
3	ENSG00000260335		coronin, actin binding protein, 1A (CORO1A) pseudogene	2.0000	0.0030
4	ENSG00000266289		novel transcript	2.0000	0.0030
5	ENSG00000270708		GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene	1.9124	0.0000
6	ENSG00000259798		novel transcript HYDIN	1.8813	0.0000
7	ENSG00000219757		pseudogene similar to part of heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) HNRPD	1.8340	0.0000
8	ENSG00000207399	RNU6-1011P	RNA, U6 small nuclear 1011, pseudogene	1.7925	0.0001
9	ENSG00000232959		novel transcript	1.7925	0.0001
10	ENSG00000254957		activating transcription factor 7 interacting protein 2 (ATF7IP2) pseudogene	1.7925	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000125508	SRMS	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	-2.0101	0.0000
63127	ENSG00000280222		TEC	-2.0098	0.0000
63126	ENSG00000187566	NHLRC1	NHL repeat containing E3 ubiquitin protein ligase 1	-2.0088	0.0000
63125	ENSG00000231983	LINC00415	long intergenic non-protein coding RNA 415	-2.0088	0.0000
63124	ENSG00000156521	TYSND1	trypsin like peroxisomal matrix peptidase 1	-2.0079	0.0000
63123	ENSG00000198780	FAM169A	family with sequence similarity 169 member A	-2.0077	0.0000
63122	ENSG00000261447		novel transcript	-2.0074	0.0000
63121	ENSG00000184058	TBX1	T-box transcription factor 1	-2.0073	0.0000
63120	ENSG00000267159		novel transcript, antisense to ARID3A	-2.0065	0.0000
63119	ENSG00000126903	SLC10A3	solute carrier family 10 member 3	-2.0065	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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