SHOGoiN Cell Methylome: GSM2773624
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773624 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M251 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000252620 | RNU6ATAC24P | RNA, U6atac small nuclear 24, pseudogene | 2.1377 | 0.0000 |
| 2 | ENSG00000230009 | MTCO2P3 | MT-CO2 pseudogene 3 | 2.0000 | 0.0030 |
| 3 | ENSG00000260335 | coronin, actin binding protein, 1A (CORO1A) pseudogene | 2.0000 | 0.0030 | |
| 4 | ENSG00000266289 | novel transcript | 2.0000 | 0.0030 | |
| 5 | ENSG00000270708 | GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene | 1.9124 | 0.0000 | |
| 6 | ENSG00000259798 | novel transcript HYDIN | 1.8813 | 0.0000 | |
| 7 | ENSG00000219757 | pseudogene similar to part of heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) HNRPD | 1.8340 | 0.0000 | |
| 8 | ENSG00000207399 | RNU6-1011P | RNA, U6 small nuclear 1011, pseudogene | 1.7925 | 0.0001 |
| 9 | ENSG00000232959 | novel transcript | 1.7925 | 0.0001 | |
| 10 | ENSG00000254957 | activating transcription factor 7 interacting protein 2 (ATF7IP2) pseudogene | 1.7925 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000146676 | PURB | purine rich element binding protein B | -2.0808 | 0.0000 |
| 63340 | ENSG00000282527 | novel transcript, antisense to ARL6 | -2.0806 | 0.0000 | |
| 63339 | ENSG00000283967 | TAF11L8 | TATA-box binding protein associated factor 11 like 8 | -2.0805 | 0.0001 |
| 63338 | ENSG00000242411 | ribosomal protein L13 (RPL13) pseudogene | -2.0803 | 0.0000 | |
| 63337 | ENSG00000148429 | USP6NL | USP6 N-terminal like | -2.0800 | 0.0000 |
| 63336 | ENSG00000272853 | novel transcript | -2.0787 | 0.0000 | |
| 63335 | ENSG00000259515 | novel transcript, antisense to CDC42BPB | -2.0786 | 0.0000 | |
| 63334 | ENSG00000167700 | MFSD3 | major facilitator superfamily domain containing 3 | -2.0785 | 0.0000 |
| 63333 | ENSG00000164418 | GRIK2 | glutamate ionotropic receptor kainate type subunit 2 | -2.0785 | 0.0000 |
| 63332 | ENSG00000182359 | KBTBD3 | kelch repeat and BTB domain containing 3 | -2.0782 | 0.0000 |
