Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773625

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773625


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M252Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224631 RPS27AP16 RPS27A pseudogene 16 2.3219 0.0001
2 ENSG00000253170 novel transcript 2.3219 0.0001
3 ENSG00000258214 novel transcript 2.3219 0.0000
4 ENSG00000260662 CDGSH iron sulfur domain 2 (CISD2) pseudogene 2.3219 0.0001
5 ENSG00000261541 novel transcript 2.3219 0.0001
6 ENSG00000199378 Y RNA 2.0000 0.0012
7 ENSG00000201980 Small nucleolar RNA SNORA62/SNORA6 family 2.0000 0.0012
8 ENSG00000206719 Y RNA 2.0000 0.0000
9 ENSG00000207873 MIR513A1 microRNA 513a-1 2.0000 0.0012
10 ENSG00000222650 RNU2-70P RNA, U2 small nuclear 70, pseudogene 2.0000 0.0012

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000246334 PRR7-AS1 PRR7 antisense RNA 1 -1.9580 0.0000
63127 ENSG00000125812 GZF1 GDNF inducible zinc finger protein 1 -1.9576 0.0000
63126 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -1.9575 0.0000
63125 ENSG00000261114 novel transcript, sense intronic to HERPUD1 -1.9574 0.0000
63124 ENSG00000126903 SLC10A3 solute carrier family 10 member 3 -1.9571 0.0000
63123 ENSG00000233926 novel transcript -1.9570 0.0000
63122 ENSG00000231476 novel transcript -1.9566 0.0000
63121 ENSG00000257058 novel transcript -1.9565 0.0000
63120 ENSG00000177685 CRACR2B calcium release activated channel regulator 2B -1.9555 0.0000
63119 ENSG00000247675 LRP4-AS1 LRP4 antisense RNA 1 -1.9554 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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