SHOGoiN Cell Methylome: GSM2773625

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773625


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M252Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224631 RPS27AP16 ribosomal protein S27a pseudogene 16 2.3219 0.0001
2 ENSG00000253170 novel transcript 2.3219 0.0001
3 ENSG00000258214 novel transcript 2.3219 0.0000
4 ENSG00000260662 CDGSH iron sulfur domain 2 (CISD2) pseudogene 2.3219 0.0001
5 ENSG00000261541 novel transcript 2.3219 0.0001
6 ENSG00000199378 NA 2.0000 0.0012
7 ENSG00000201980 NA 2.0000 0.0012
8 ENSG00000206719 NA 2.0000 0.0000
9 ENSG00000207873 MIR513A1 microRNA 513a-1 2.0000 0.0012
10 ENSG00000222650 RNU2-70P RNA, U2 small nuclear 70, pseudogene 2.0000 0.0012

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000166448 TMEM130 transmembrane protein 130 -2.0104 0.0000
63340 ENSG00000185519 FAM131C family with sequence similarity 131 member C -2.0097 0.0000
63339 ENSG00000275836 MIR6068 microRNA 6068 -2.0095 0.0000
63338 ENSG00000027697 IFNGR1 interferon gamma receptor 1 -2.0067 0.0000
63337 ENSG00000233069 novel transcript -2.0063 0.0000
63336 ENSG00000254456 novel transcript -2.0061 0.1615
63335 ENSG00000170409 pseudogene similar to part of stromal antigen 3 STAG3 -2.0055 0.0000
63334 ENSG00000283764 MIR6850 microRNA 6850 -2.0051 0.0000
63333 ENSG00000180447 GAS1 growth arrest specific 1 -2.0048 0.0000
63332 ENSG00000276964 DUX4L23 double homeobox 4 like 23 (pseudogene) -2.0047 0.0672

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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