Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773626

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773626


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M253Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229275 novel transcript 3.5850 0.0000
2 ENSG00000207156 RNU6-505P RNA, U6 small nuclear 505, pseudogene 3.4594 0.0000
3 ENSG00000256563 NANOGNBP2 NANOGNB pseudogene 2 3.3336 0.0000
4 ENSG00000114853 ZBTB47 zinc finger and BTB domain containing 47 3.3219 0.0000
5 ENSG00000256897 novel transcript 3.2664 0.0000
6 ENSG00000221023 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene 3.1699 0.0000
7 ENSG00000154124 OTULIN OTU deubiquitinase with linear linkage specificity 3.1427 0.0000
8 ENSG00000187268 FAM9C family with sequence similarity 9 member C 3.0000 0.0000
9 ENSG00000216710 COX6A1P3 cytochrome c oxidase subunit 6A1 pseudogene 3 3.0000 0.0000
10 ENSG00000232675 novel transcript, antisense to SLC24A3 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000101236 RNF24 ring finger protein 24 -2.2199 0.0000
63127 ENSG00000278921 EPB41L4A-DT EPB41L4A divergent transcript -2.2198 0.0000
63126 ENSG00000207119 Small nucleolar RNA U3 -2.2195 0.0000
63125 ENSG00000160194 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 -2.2185 0.0000
63124 ENSG00000101079 NDRG3 NDRG family member 3 -2.2180 0.0000
63123 ENSG00000165912 PACSIN3 protein kinase C and casein kinase substrate in neurons 3 -2.2173 0.0000
63122 ENSG00000124789 NUP153 nucleoporin 153 -2.2168 0.0000
63121 ENSG00000227307 novel transcript -2.2166 0.0000
63120 ENSG00000199940 RN7SKP75 RN7SK pseudogene 75 -2.2165 0.2222
63119 ENSG00000259172 novel transcript, antisense to SNRPA1 and PCSK6 -2.2159 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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