Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773626
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773626
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M253
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000229275
novel transcript
3.5850
0.0000
2
ENSG00000207156
RNU6-505P
RNA, U6 small nuclear 505, pseudogene
3.4594
0.0000
3
ENSG00000256563
NANOGNBP2
NANOGNB pseudogene 2
3.3336
0.0000
4
ENSG00000114853
ZBTB47
zinc finger and BTB domain containing 47
3.3219
0.0000
5
ENSG00000256897
novel transcript
3.2664
0.0000
6
ENSG00000221023
RNU6ATAC19P
RNA, U6atac small nuclear 19, pseudogene
3.1699
0.0000
7
ENSG00000154124
OTULIN
OTU deubiquitinase with linear linkage specificity
3.1427
0.0000
8
ENSG00000187268
FAM9C
family with sequence similarity 9 member C
3.0000
0.0000
9
ENSG00000216710
COX6A1P3
cytochrome c oxidase subunit 6A1 pseudogene 3
3.0000
0.0000
10
ENSG00000232675
novel transcript, antisense to SLC24A3
3.0000
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000101236
RNF24
ring finger protein 24
-2.2199
0.0000
63127
ENSG00000278921
EPB41L4A-DT
EPB41L4A divergent transcript
-2.2198
0.0000
63126
ENSG00000207119
Small nucleolar RNA U3
-2.2195
0.0000
63125
ENSG00000160194
NDUFV3
NADH:ubiquinone oxidoreductase subunit V3
-2.2185
0.0000
63124
ENSG00000101079
NDRG3
NDRG family member 3
-2.2180
0.0000
63123
ENSG00000165912
PACSIN3
protein kinase C and casein kinase substrate in neurons 3
-2.2173
0.0000
63122
ENSG00000124789
NUP153
nucleoporin 153
-2.2168
0.0000
63121
ENSG00000227307
novel transcript
-2.2166
0.0000
63120
ENSG00000199940
RN7SKP75
RN7SK pseudogene 75
-2.2165
0.2222
63119
ENSG00000259172
novel transcript, antisense to SNRPA1 and PCSK6
-2.2159
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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