Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773626

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773626 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M253	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000229275		novel transcript	3.5850	0.0000
2	ENSG00000207156	RNU6-505P	RNA, U6 small nuclear 505, pseudogene	3.4594	0.0000
3	ENSG00000256563	NANOGNBP2	NANOGNB pseudogene 2	3.3336	0.0000
4	ENSG00000114853	ZBTB47	zinc finger and BTB domain containing 47	3.3219	0.0000
5	ENSG00000256897		novel transcript	3.2664	0.0000
6	ENSG00000221023	RNU6ATAC19P	RNA, U6atac small nuclear 19, pseudogene	3.1699	0.0000
7	ENSG00000154124	OTULIN	OTU deubiquitinase with linear linkage specificity	3.1427	0.0000
8	ENSG00000187268	FAM9C	family with sequence similarity 9 member C	3.0000	0.0000
9	ENSG00000216710	COX6A1P3	cytochrome c oxidase subunit 6A1 pseudogene 3	3.0000	0.0000
10	ENSG00000232675		novel transcript, antisense to SLC24A3	3.0000	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000101236	RNF24	ring finger protein 24	-2.2199	0.0000
63127	ENSG00000278921	EPB41L4A-DT	EPB41L4A divergent transcript	-2.2198	0.0000
63126	ENSG00000207119		Small nucleolar RNA U3	-2.2195	0.0000
63125	ENSG00000160194	NDUFV3	NADH:ubiquinone oxidoreductase subunit V3	-2.2185	0.0000
63124	ENSG00000101079	NDRG3	NDRG family member 3	-2.2180	0.0000
63123	ENSG00000165912	PACSIN3	protein kinase C and casein kinase substrate in neurons 3	-2.2173	0.0000
63122	ENSG00000124789	NUP153	nucleoporin 153	-2.2168	0.0000
63121	ENSG00000227307		novel transcript	-2.2166	0.0000
63120	ENSG00000199940	RN7SKP75	RN7SK pseudogene 75	-2.2165	0.2222
63119	ENSG00000259172		novel transcript, antisense to SNRPA1 and PCSK6	-2.2159	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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