SHOGoiN Cell Methylome: GSM2773626

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773626


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M253Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229275 novel transcript 3.5850 0.0000
2 ENSG00000207156 RNU6-505P RNA, U6 small nuclear 505, pseudogene 3.4594 0.0000
3 ENSG00000256563 NANOGNBP2 NANOGNB pseudogene 2 3.3336 0.0000
4 ENSG00000114853 ZBTB47 zinc finger and BTB domain containing 47 3.3219 0.0000
5 ENSG00000256897 novel transcript 3.2664 0.0000
6 ENSG00000221023 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene 3.1699 0.0000
7 ENSG00000154124 OTULIN OTU deubiquitinase with linear linkage specificity 3.1427 0.0000
8 ENSG00000187268 FAM9C family with sequence similarity 9 member C 3.0000 0.0000
9 ENSG00000216710 COX6A1P3 cytochrome c oxidase subunit 6A1 pseudogene 3 3.0000 0.0000
10 ENSG00000232675 novel transcript, antisense to SLC24A3 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223656 HMGB3P10 high mobility group box 3 pseudogene 10 -2.3219 1.0000
63340 ENSG00000223602 novel ankyrin repeat domain protein pseudogene -2.3219 0.6087
63339 ENSG00000215712 TMEM242 transmembrane protein 242 -2.3219 1.0000
63338 ENSG00000215159 novel transcript -2.3219 1.0000
63337 ENSG00000212036 MIR548BA microRNA 548ba -2.3219 1.0000
63336 ENSG00000211810 TRAV29DV5 T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene) -2.3219 0.6087
63335 ENSG00000206047 DEFA1 defensin alpha 1 -2.3219 0.0263
63334 ENSG00000205642 VCX3B variable charge X-linked 3B -2.3219 0.6087
63333 ENSG00000205396 LINC00661 long intergenic non-protein coding RNA 661 -2.3219 0.0985
63332 ENSG00000200665 RNU6-1188P RNA, U6 small nuclear 1188, pseudogene -2.3219 0.6087

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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