SHOGoiN Cell Methylome: GSM2773626
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773626 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M253 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000229275 | novel transcript | 3.5850 | 0.0000 | |
| 2 | ENSG00000207156 | RNU6-505P | RNA, U6 small nuclear 505, pseudogene | 3.4594 | 0.0000 |
| 3 | ENSG00000256563 | NANOGNBP2 | NANOGNB pseudogene 2 | 3.3336 | 0.0000 |
| 4 | ENSG00000114853 | ZBTB47 | zinc finger and BTB domain containing 47 | 3.3219 | 0.0000 |
| 5 | ENSG00000256897 | novel transcript | 3.2664 | 0.0000 | |
| 6 | ENSG00000221023 | RNU6ATAC19P | RNA, U6atac small nuclear 19, pseudogene | 3.1699 | 0.0000 |
| 7 | ENSG00000154124 | OTULIN | OTU deubiquitinase with linear linkage specificity | 3.1427 | 0.0000 |
| 8 | ENSG00000187268 | FAM9C | family with sequence similarity 9 member C | 3.0000 | 0.0000 |
| 9 | ENSG00000216710 | COX6A1P3 | cytochrome c oxidase subunit 6A1 pseudogene 3 | 3.0000 | 0.0000 |
| 10 | ENSG00000232675 | novel transcript, antisense to SLC24A3 | 3.0000 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000223656 | HMGB3P10 | high mobility group box 3 pseudogene 10 | -2.3219 | 1.0000 |
| 63340 | ENSG00000223602 | novel ankyrin repeat domain protein pseudogene | -2.3219 | 0.6087 | |
| 63339 | ENSG00000215712 | TMEM242 | transmembrane protein 242 | -2.3219 | 1.0000 |
| 63338 | ENSG00000215159 | novel transcript | -2.3219 | 1.0000 | |
| 63337 | ENSG00000212036 | MIR548BA | microRNA 548ba | -2.3219 | 1.0000 |
| 63336 | ENSG00000211810 | TRAV29DV5 | T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene) | -2.3219 | 0.6087 |
| 63335 | ENSG00000206047 | DEFA1 | defensin alpha 1 | -2.3219 | 0.0263 |
| 63334 | ENSG00000205642 | VCX3B | variable charge X-linked 3B | -2.3219 | 0.6087 |
| 63333 | ENSG00000205396 | LINC00661 | long intergenic non-protein coding RNA 661 | -2.3219 | 0.0985 |
| 63332 | ENSG00000200665 | RNU6-1188P | RNA, U6 small nuclear 1188, pseudogene | -2.3219 | 0.6087 |
