SHOGoiN Cell Methylome: GSM2773627

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773627


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M254Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000116194 ANGPTL1 angiopoietin like 1 2.5850 0.0000
2 ENSG00000206678 RNU6-144P RNA, U6 small nuclear 144, pseudogene 2.3510 0.0000
3 ENSG00000272732 novel transcript 2.3219 0.0000
4 ENSG00000238311 SNORD13E small nucleolar RNA, C/D box 13E 2.0000 0.0018
5 ENSG00000252723 RNU6-677P RNA, U6 small nuclear 677, pseudogene 2.0000 0.0000
6 ENSG00000261213 novel transcript 2.0000 0.0018
7 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.0000 0.0018
8 ENSG00000206733 RNU6-641P RNA, U6 small nuclear 641, pseudogene 1.8617 0.0000
9 ENSG00000260433 LINC01917 long intergenic non-protein coding RNA 1917 1.7233 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000201925 RNA5S15 RNA, 5S ribosomal 15 -1.9891 0.0000
63340 ENSG00000232546 pseudogene similar to part of general transcription factor II, i (GTF2I) -1.9887 0.0000
63339 ENSG00000230756 RHOQP3 ras homolog family member Q pseudogene 3 -1.9883 0.0000
63338 ENSG00000136169 SETDB2 SET domain bifurcated histone lysine methyltransferase 2 -1.9867 0.0000
63337 ENSG00000213930 GALT galactose-1-phosphate uridylyltransferase -1.9866 0.0000
63336 ENSG00000050628 PTGER3 prostaglandin E receptor 3 -1.9862 0.0000
63335 ENSG00000267342 novel transcript, antisense to MRPL38 -1.9858 0.0000
63334 ENSG00000272455 novel transcript -1.9854 0.0000
63333 ENSG00000102871 TRADD TNFRSF1A associated via death domain -1.9850 0.0000
63332 ENSG00000238265 LINC00317 long intergenic non-protein coding RNA 317 -1.9850 0.2460

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...