Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773627

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773627


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M254Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000116194 ANGPTL1 angiopoietin like 1 2.5850 0.0000
2 ENSG00000206678 RNU6-144P RNA, U6 small nuclear 144, pseudogene 2.3510 0.0000
3 ENSG00000272732 novel transcript 2.3219 0.0000
4 ENSG00000238311 SNORD13E small nucleolar RNA, C/D box 13E 2.0000 0.0018
5 ENSG00000252723 RNU6-677P RNA, U6 small nuclear 677, pseudogene 2.0000 0.0000
6 ENSG00000261213 novel transcript 2.0000 0.0018
7 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.0000 0.0018
8 ENSG00000206733 RNU6-641P RNA, U6 small nuclear 641, pseudogene 1.8617 0.0000
9 ENSG00000260433 LINC01917 long intergenic non-protein coding RNA 1917 1.7233 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000174807 CD248 CD248 molecule -1.9248 0.0000
63127 ENSG00000158747 NBL1 NBL1, DAN family BMP antagonist -1.9248 0.0000
63126 ENSG00000167536 DHRS13 dehydrogenase/reductase 13 -1.9245 0.0000
63125 ENSG00000205436 EXOC3L4 exocyst complex component 3 like 4 -1.9243 0.0000
63124 ENSG00000185272 RBM11 RNA binding motif protein 11 -1.9242 0.0000
63123 ENSG00000258397 BCAR1P1 BCAR1 pseudogene 1 -1.9240 0.0000
63122 ENSG00000233081 novel transcript -1.9239 0.0000
63121 ENSG00000269736 novel transcript -1.9237 0.0000
63120 ENSG00000205628 LINC01446 long intergenic non-protein coding RNA 1446 -1.9236 0.0002
63119 ENSG00000277342 novel transcript, sense intronic to BICD1 -1.9235 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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