Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773627
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773627
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M254
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000116194
ANGPTL1
angiopoietin like 1
2.5850
0.0000
2
ENSG00000206678
RNU6-144P
RNA, U6 small nuclear 144, pseudogene
2.3510
0.0000
3
ENSG00000272732
novel transcript
2.3219
0.0000
4
ENSG00000238311
SNORD13E
small nucleolar RNA, C/D box 13E
2.0000
0.0018
5
ENSG00000252723
RNU6-677P
RNA, U6 small nuclear 677, pseudogene
2.0000
0.0000
6
ENSG00000261213
novel transcript
2.0000
0.0018
7
ENSG00000277130
novel transcript, antisense to PPP1R12A
2.0000
0.0018
8
ENSG00000206733
RNU6-641P
RNA, U6 small nuclear 641, pseudogene
1.8617
0.0000
9
ENSG00000260433
LINC01917
long intergenic non-protein coding RNA 1917
1.7233
0.0000
10
ENSG00000244389
RN7SL242P
RNA, 7SL, cytoplasmic 242, pseudogene
1.6610
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000174807
CD248
CD248 molecule
-1.9248
0.0000
63127
ENSG00000158747
NBL1
NBL1, DAN family BMP antagonist
-1.9248
0.0000
63126
ENSG00000167536
DHRS13
dehydrogenase/reductase 13
-1.9245
0.0000
63125
ENSG00000205436
EXOC3L4
exocyst complex component 3 like 4
-1.9243
0.0000
63124
ENSG00000185272
RBM11
RNA binding motif protein 11
-1.9242
0.0000
63123
ENSG00000258397
BCAR1P1
BCAR1 pseudogene 1
-1.9240
0.0000
63122
ENSG00000233081
novel transcript
-1.9239
0.0000
63121
ENSG00000269736
novel transcript
-1.9237
0.0000
63120
ENSG00000205628
LINC01446
long intergenic non-protein coding RNA 1446
-1.9236
0.0002
63119
ENSG00000277342
novel transcript, sense intronic to BICD1
-1.9235
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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