Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773627

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773627 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M254	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000116194	ANGPTL1	angiopoietin like 1	2.5850	0.0000
2	ENSG00000206678	RNU6-144P	RNA, U6 small nuclear 144, pseudogene	2.3510	0.0000
3	ENSG00000272732		novel transcript	2.3219	0.0000
4	ENSG00000238311	SNORD13E	small nucleolar RNA, C/D box 13E	2.0000	0.0018
5	ENSG00000252723	RNU6-677P	RNA, U6 small nuclear 677, pseudogene	2.0000	0.0000
6	ENSG00000261213		novel transcript	2.0000	0.0018
7	ENSG00000277130		novel transcript, antisense to PPP1R12A	2.0000	0.0018
8	ENSG00000206733	RNU6-641P	RNA, U6 small nuclear 641, pseudogene	1.8617	0.0000
9	ENSG00000260433	LINC01917	long intergenic non-protein coding RNA 1917	1.7233	0.0000
10	ENSG00000244389	RN7SL242P	RNA, 7SL, cytoplasmic 242, pseudogene	1.6610	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000174807	CD248	CD248 molecule	-1.9248	0.0000
63127	ENSG00000158747	NBL1	NBL1, DAN family BMP antagonist	-1.9248	0.0000
63126	ENSG00000167536	DHRS13	dehydrogenase/reductase 13	-1.9245	0.0000
63125	ENSG00000205436	EXOC3L4	exocyst complex component 3 like 4	-1.9243	0.0000
63124	ENSG00000185272	RBM11	RNA binding motif protein 11	-1.9242	0.0000
63123	ENSG00000258397	BCAR1P1	BCAR1 pseudogene 1	-1.9240	0.0000
63122	ENSG00000233081		novel transcript	-1.9239	0.0000
63121	ENSG00000269736		novel transcript	-1.9237	0.0000
63120	ENSG00000205628	LINC01446	long intergenic non-protein coding RNA 1446	-1.9236	0.0002
63119	ENSG00000277342		novel transcript, sense intronic to BICD1	-1.9235	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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