SHOGoiN Cell Methylome: GSM2773627
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773627 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M254 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000116194 | ANGPTL1 | angiopoietin like 1 | 2.5850 | 0.0000 |
| 2 | ENSG00000206678 | RNU6-144P | RNA, U6 small nuclear 144, pseudogene | 2.3510 | 0.0000 |
| 3 | ENSG00000272732 | novel transcript | 2.3219 | 0.0000 | |
| 4 | ENSG00000238311 | SNORD13E | small nucleolar RNA, C/D box 13E | 2.0000 | 0.0018 |
| 5 | ENSG00000252723 | RNU6-677P | RNA, U6 small nuclear 677, pseudogene | 2.0000 | 0.0000 |
| 6 | ENSG00000261213 | novel transcript | 2.0000 | 0.0018 | |
| 7 | ENSG00000277130 | novel transcript, antisense to PPP1R12A | 2.0000 | 0.0018 | |
| 8 | ENSG00000206733 | RNU6-641P | RNA, U6 small nuclear 641, pseudogene | 1.8617 | 0.0000 |
| 9 | ENSG00000260433 | LINC01917 | long intergenic non-protein coding RNA 1917 | 1.7233 | 0.0000 |
| 10 | ENSG00000244389 | RN7SL242P | RNA, 7SL, cytoplasmic 242, pseudogene | 1.6610 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000201925 | RNA5S15 | RNA, 5S ribosomal 15 | -1.9891 | 0.0000 |
| 63340 | ENSG00000232546 | pseudogene similar to part of general transcription factor II, i (GTF2I) | -1.9887 | 0.0000 | |
| 63339 | ENSG00000230756 | RHOQP3 | ras homolog family member Q pseudogene 3 | -1.9883 | 0.0000 |
| 63338 | ENSG00000136169 | SETDB2 | SET domain bifurcated histone lysine methyltransferase 2 | -1.9867 | 0.0000 |
| 63337 | ENSG00000213930 | GALT | galactose-1-phosphate uridylyltransferase | -1.9866 | 0.0000 |
| 63336 | ENSG00000050628 | PTGER3 | prostaglandin E receptor 3 | -1.9862 | 0.0000 |
| 63335 | ENSG00000267342 | novel transcript, antisense to MRPL38 | -1.9858 | 0.0000 | |
| 63334 | ENSG00000272455 | novel transcript | -1.9854 | 0.0000 | |
| 63333 | ENSG00000102871 | TRADD | TNFRSF1A associated via death domain | -1.9850 | 0.0000 |
| 63332 | ENSG00000238265 | LINC00317 | long intergenic non-protein coding RNA 317 | -1.9850 | 0.2460 |
