Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773628

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773628


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M255Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279707 TEC 2.8074 0.0000
2 ENSG00000272632 novel transcript 2.5646 0.0000
3 ENSG00000279595 TEC 2.3219 0.0003
4 ENSG00000250219 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 2.1610 0.0000
5 ENSG00000242121 RN7SL267P RNA, 7SL, cytoplasmic 267, pseudogene 2.1073 0.0000
6 ENSG00000212199 RNU6-127P RNA, U6 small nuclear 127, pseudogene 2.0000 0.0000
7 ENSG00000252537 NA 2.0000 0.0020
8 ENSG00000264699 LINC01912 long intergenic non-protein coding RNA 1912 2.0000 0.0020
9 ENSG00000278873 uncharacterized LOC100133319 1.8461 0.0000
10 ENSG00000242412 DBIL5P2 diazepam binding inhibitor-like 5 pseudogene 2 1.7290 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000135638 EMX1 empty spiracles homeobox 1 -2.0046 0.0000
63127 ENSG00000132259 CNGA4 cyclic nucleotide gated channel subunit alpha 4 -2.0042 0.0000
63126 ENSG00000158813 EDA ectodysplasin A -2.0041 0.0000
63125 ENSG00000152518 ZFP36L2 ZFP36 ring finger protein like 2 -2.0037 0.0000
63124 ENSG00000251439 KRTAP4-17P keratin associated protein 4-17, pseudogene -2.0036 0.0000
63123 ENSG00000127561 SYNGR3 synaptogyrin 3 -2.0035 0.0000
63122 ENSG00000123570 RAB9B RAB9B, member RAS oncogene family -2.0031 0.0000
63121 ENSG00000206679 Y RNA -2.0030 0.0000
63120 ENSG00000144935 TRPC1 transient receptor potential cation channel subfamily C member 1 -2.0029 0.0000
63119 ENSG00000236401 SLC4A1APP2 solute carrier family 4 member 1 adaptor protein pseudogene 2 -2.0026 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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