SHOGoiN Cell Methylome: GSM2773628

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773628


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M255Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279707 TEC 2.8074 0.0000
2 ENSG00000272632 novel transcript 2.5646 0.0000
3 ENSG00000279595 TEC 2.3219 0.0003
4 ENSG00000250219 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 2.1610 0.0000
5 ENSG00000242121 RN7SL267P RNA, 7SL, cytoplasmic 267, pseudogene 2.1073 0.0000
6 ENSG00000212199 RNU6-127P RNA, U6 small nuclear 127, pseudogene 2.0000 0.0000
7 ENSG00000252537 NA 2.0000 0.0020
8 ENSG00000264699 LINC01912 long intergenic non-protein coding RNA 1912 2.0000 0.0020
9 ENSG00000278873 TEC 1.8461 0.0000
10 ENSG00000242412 DBIL5P2 diazepam binding inhibitor-like 5 pseudogene 2 1.7290 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000162878 PKDCC protein kinase domain containing, cytoplasmic -2.0637 0.0000
63340 ENSG00000198743 SLC5A3 solute carrier family 5 member 3 -2.0636 0.0000
63339 ENSG00000259721 novel transcript -2.0635 0.0000
63338 ENSG00000276949 galactose-3-O-sulfotransferase 1 (GAL3ST1) pseudogene -2.0633 0.0000
63337 ENSG00000242593 novel transcript -2.0631 0.0000
63336 ENSG00000248275 TRIM52-AS1 TRIM52 antisense RNA 1 (head to head) -2.0625 0.0000
63335 ENSG00000119669 IRF2BPL interferon regulatory factor 2 binding protein like -2.0625 0.0000
63334 ENSG00000258068 novel transcript, sense intronic to PRICKLE1 -2.0621 0.0000
63333 ENSG00000220517 ASS1P1 argininosuccinate synthetase 1 pseudogene 1 -2.0618 0.0000
63332 ENSG00000267909 CCDC177 coiled-coil domain containing 177 -2.0616 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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