SHOGoiN Cell Methylome: GSM2773629

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773629


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M256Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248583 ankyrin repeat domain family (ANKRD) pseudogene 2.3219 0.0004
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1642 0.0000
3 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1551 0.0000
4 ENSG00000228901 HMGN2P36 high mobility group nucleosomal binding domain 2 pseudogene 36 2.0575 0.0000
5 ENSG00000230457 PA2G4P4 proliferation-associated 2G4 pseudogene 4 2.0219 0.0000
6 ENSG00000165246 NLGN4Y neuroligin 4 Y-linked 2.0000 0.0000
7 ENSG00000217643 PTGES3P2 prostaglandin E synthase 3 pseudogene 2 2.0000 0.0000
8 ENSG00000224498 MAPKAPK5P1 mitogen-activated protein kinase-activated protein kinase 5 pseudogene 1 2.0000 0.0028
9 ENSG00000241667 novel transcript 2.0000 0.0028
10 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000257556 LINC02298 long intergenic non-protein coding RNA 2298 -2.1423 0.0000
63340 ENSG00000273289 novel transcript, antisense to C22orf26 -2.1422 0.0000
63339 ENSG00000232132 NDFIP2-AS1 NDFIP2 antisense RNA 1 -2.1420 0.0000
63338 ENSG00000261115 TMEM178B transmembrane protein 178B -2.1419 0.0000
63337 ENSG00000087365 SF3B2 splicing factor 3b subunit 2 -2.1413 0.0000
63336 ENSG00000249184 novel transcript -2.1409 0.0004
63335 ENSG00000158301 GPRASP2 G protein-coupled receptor associated sorting protein 2 -2.1403 0.0000
63334 ENSG00000244295 RPS20P21 ribosomal protein S20 pseudogene 21 -2.1402 0.0000
63333 ENSG00000235875 ARHGEF7-AS2 ARHGEF7 antisense RNA 2 -2.1402 0.0000
63332 ENSG00000275728 novel transcript -2.1400 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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