Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773629

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773629


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M256Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248583 ankyrin repeat domain family (ANKRD) pseudogene 2.3219 0.0004
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1642 0.0000
3 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1551 0.0000
4 ENSG00000228901 HMGN2P36 high mobility group nucleosomal binding domain 2 pseudogene 36 2.0575 0.0000
5 ENSG00000230457 PA2G4P4 proliferation-associated 2G4 pseudogene 4 2.0219 0.0000
6 ENSG00000165246 NLGN4Y neuroligin 4 Y-linked 2.0000 0.0000
7 ENSG00000217643 PTGES3P2 prostaglandin E synthase 3 pseudogene 2 2.0000 0.0000
8 ENSG00000224498 MAPKAPK5P1 MAPKAPK5 pseudogene 1 2.0000 0.0028
9 ENSG00000241667 novel transcript 2.0000 0.0028
10 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000283414 U6 spliceosomal RNA -2.0802 0.0000
63127 ENSG00000263585 novel transcript, antisense PYCR1 -2.0801 0.0000
63126 ENSG00000164588 HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -2.0789 0.0000
63125 ENSG00000218014 KRT19P1 keratin 19 pseudogene 1 -2.0789 0.0000
63124 ENSG00000242509 RN7SL156P RNA, 7SL, cytoplasmic 156, pseudogene -2.0788 0.0000
63123 ENSG00000250734 novel transcript, antisense to SNX27 -2.0785 0.0000
63122 ENSG00000267317 novel transcript, antisense to APC2 -2.0783 0.0000
63121 ENSG00000267735 novel transcript, antisense to DNASE2 -2.0780 0.0000
63120 ENSG00000226252 novel transcript -2.0780 0.0000
63119 ENSG00000198841 KTI12 KTI12 chromatin associated homolog -2.0777 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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