Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773630

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773630 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M257	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000252524		Y RNA	2.3219	0.0003
2	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	2.1333	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.0322	0.0000
4	ENSG00000228837	CBX3P6	chromobox 3 pseudogene 6	2.0000	0.0020
5	ENSG00000233907	LINC01761	long intergenic non-protein coding RNA 1761	2.0000	0.0000
6	ENSG00000234384	LINC01049	long intergenic non-protein coding RNA 1049	2.0000	0.0020
7	ENSG00000240327	RN7SL93P	RNA, 7SL, cytoplasmic 93, pseudogene	2.0000	0.0020
8	ENSG00000271508		ribosomal protein S2 (RPS2) pseudogene	2.0000	0.0000
9	ENSG00000235945		novel pseudogene	1.9534	0.0000
10	ENSG00000236359	OR51B8P	olfactory receptor family 51 subfamily B member 8 pseudogene	1.8716	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000268555		novel transcript	-2.1005	0.0000
63127	ENSG00000243738	RN7SL181P	RNA, 7SL, cytoplasmic 181, pseudogene	-2.1003	0.0000
63126	ENSG00000224812	TMEM72-AS1	TMEM72 antisense RNA 1	-2.1003	0.0000
63125	ENSG00000273509	CNTNAP3P1	CNTNAP3 pseudogene 1	-2.1002	0.0000
63124	ENSG00000268603		novel transcript, antisense to SPEG	-2.1001	0.0000
63123	ENSG00000153485	TMEM251	transmembrane protein 251	-2.0997	0.0000
63122	ENSG00000170542	SERPINB9	serpin family B member 9	-2.0995	0.0000
63121	ENSG00000116990	MYCL	MYCL proto-oncogene, bHLH transcription factor	-2.0986	0.0000
63120	ENSG00000226709	FGF12-AS3	FGF12 antisense RNA 3	-2.0986	0.0000
63119	ENSG00000238917	SNORD10	small nucleolar RNA, C/D box 10	-2.0985	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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