Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773630
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773630
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M257
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000252524
Y RNA
2.3219
0.0003
2
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
2.1333
0.0000
3
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.0322
0.0000
4
ENSG00000228837
CBX3P6
chromobox 3 pseudogene 6
2.0000
0.0020
5
ENSG00000233907
LINC01761
long intergenic non-protein coding RNA 1761
2.0000
0.0000
6
ENSG00000234384
LINC01049
long intergenic non-protein coding RNA 1049
2.0000
0.0020
7
ENSG00000240327
RN7SL93P
RNA, 7SL, cytoplasmic 93, pseudogene
2.0000
0.0020
8
ENSG00000271508
ribosomal protein S2 (RPS2) pseudogene
2.0000
0.0000
9
ENSG00000235945
novel pseudogene
1.9534
0.0000
10
ENSG00000236359
OR51B8P
olfactory receptor family 51 subfamily B member 8 pseudogene
1.8716
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000268555
novel transcript
-2.1005
0.0000
63127
ENSG00000243738
RN7SL181P
RNA, 7SL, cytoplasmic 181, pseudogene
-2.1003
0.0000
63126
ENSG00000224812
TMEM72-AS1
TMEM72 antisense RNA 1
-2.1003
0.0000
63125
ENSG00000273509
CNTNAP3P1
CNTNAP3 pseudogene 1
-2.1002
0.0000
63124
ENSG00000268603
novel transcript, antisense to SPEG
-2.1001
0.0000
63123
ENSG00000153485
TMEM251
transmembrane protein 251
-2.0997
0.0000
63122
ENSG00000170542
SERPINB9
serpin family B member 9
-2.0995
0.0000
63121
ENSG00000116990
MYCL
MYCL proto-oncogene, bHLH transcription factor
-2.0986
0.0000
63120
ENSG00000226709
FGF12-AS3
FGF12 antisense RNA 3
-2.0986
0.0000
63119
ENSG00000238917
SNORD10
small nucleolar RNA, C/D box 10
-2.0985
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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