SHOGoiN Cell Methylome: GSM2773630
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773630 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M257 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000252524 | NA | 2.3219 | 0.0003 | |
| 2 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 2.1333 | 0.0000 |
| 3 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.0322 | 0.0000 | |
| 4 | ENSG00000228837 | CBX3P6 | chromobox 3 pseudogene 6 | 2.0000 | 0.0020 |
| 5 | ENSG00000233907 | LINC01761 | long intergenic non-protein coding RNA 1761 | 2.0000 | 0.0000 |
| 6 | ENSG00000234384 | LINC01049 | long intergenic non-protein coding RNA 1049 | 2.0000 | 0.0020 |
| 7 | ENSG00000240327 | RN7SL93P | RNA, 7SL, cytoplasmic 93, pseudogene | 2.0000 | 0.0020 |
| 8 | ENSG00000271508 | ribosomal protein S2 (RPS2) pseudogene | 2.0000 | 0.0000 | |
| 9 | ENSG00000235945 | novel pseudogene | 1.9534 | 0.0000 | |
| 10 | ENSG00000236359 | OR51B8P | olfactory receptor family 51 subfamily B member 8 pseudogene | 1.8716 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000199792 | RNU6-1233P | RNA, U6 small nuclear 1233, pseudogene | -2.1610 | 0.6068 |
| 63340 | ENSG00000261798 | novel transcript, antisense to BMP8B | -2.1608 | 0.0000 | |
| 63339 | ENSG00000270659 | novel transcript | -2.1604 | 0.0000 | |
| 63338 | ENSG00000187013 | C17orf82 | chromosome 17 open reading frame 82 | -2.1601 | 0.0000 |
| 63337 | ENSG00000271192 | novel transcript | -2.1594 | 0.0000 | |
| 63336 | ENSG00000274934 | NA | -2.1594 | 0.0000 | |
| 63335 | ENSG00000224272 | novel transcript | -2.1581 | 0.0000 | |
| 63334 | ENSG00000279685 | MAPT-IT1 | MAPT intronic transcript 1 | -2.1576 | 0.0000 |
| 63333 | ENSG00000116962 | NID1 | nidogen 1 | -2.1575 | 0.0000 |
| 63332 | ENSG00000283973 | novel transcript | -2.1570 | 0.0000 |
