Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773630

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773630


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M257Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252524 Y RNA 2.3219 0.0003
2 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.1333 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0322 0.0000
4 ENSG00000228837 CBX3P6 chromobox 3 pseudogene 6 2.0000 0.0020
5 ENSG00000233907 LINC01761 long intergenic non-protein coding RNA 1761 2.0000 0.0000
6 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.0000 0.0020
7 ENSG00000240327 RN7SL93P RNA, 7SL, cytoplasmic 93, pseudogene 2.0000 0.0020
8 ENSG00000271508 ribosomal protein S2 (RPS2) pseudogene 2.0000 0.0000
9 ENSG00000235945 novel pseudogene 1.9534 0.0000
10 ENSG00000236359 OR51B8P olfactory receptor family 51 subfamily B member 8 pseudogene 1.8716 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000268555 novel transcript -2.1005 0.0000
63127 ENSG00000243738 RN7SL181P RNA, 7SL, cytoplasmic 181, pseudogene -2.1003 0.0000
63126 ENSG00000224812 TMEM72-AS1 TMEM72 antisense RNA 1 -2.1003 0.0000
63125 ENSG00000273509 CNTNAP3P1 CNTNAP3 pseudogene 1 -2.1002 0.0000
63124 ENSG00000268603 novel transcript, antisense to SPEG -2.1001 0.0000
63123 ENSG00000153485 TMEM251 transmembrane protein 251 -2.0997 0.0000
63122 ENSG00000170542 SERPINB9 serpin family B member 9 -2.0995 0.0000
63121 ENSG00000116990 MYCL MYCL proto-oncogene, bHLH transcription factor -2.0986 0.0000
63120 ENSG00000226709 FGF12-AS3 FGF12 antisense RNA 3 -2.0986 0.0000
63119 ENSG00000238917 SNORD10 small nucleolar RNA, C/D box 10 -2.0985 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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