SHOGoiN Cell Methylome: GSM2773630

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773630


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M257Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252524 NA 2.3219 0.0003
2 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.1333 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0322 0.0000
4 ENSG00000228837 CBX3P6 chromobox 3 pseudogene 6 2.0000 0.0020
5 ENSG00000233907 LINC01761 long intergenic non-protein coding RNA 1761 2.0000 0.0000
6 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.0000 0.0020
7 ENSG00000240327 RN7SL93P RNA, 7SL, cytoplasmic 93, pseudogene 2.0000 0.0020
8 ENSG00000271508 ribosomal protein S2 (RPS2) pseudogene 2.0000 0.0000
9 ENSG00000235945 novel pseudogene 1.9534 0.0000
10 ENSG00000236359 OR51B8P olfactory receptor family 51 subfamily B member 8 pseudogene 1.8716 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000199792 RNU6-1233P RNA, U6 small nuclear 1233, pseudogene -2.1610 0.6068
63340 ENSG00000261798 novel transcript, antisense to BMP8B -2.1608 0.0000
63339 ENSG00000270659 novel transcript -2.1604 0.0000
63338 ENSG00000187013 C17orf82 chromosome 17 open reading frame 82 -2.1601 0.0000
63337 ENSG00000271192 novel transcript -2.1594 0.0000
63336 ENSG00000274934 NA -2.1594 0.0000
63335 ENSG00000224272 novel transcript -2.1581 0.0000
63334 ENSG00000279685 MAPT-IT1 MAPT intronic transcript 1 -2.1576 0.0000
63333 ENSG00000116962 NID1 nidogen 1 -2.1575 0.0000
63332 ENSG00000283973 novel transcript -2.1570 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...