Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773631

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773631


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M258Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234950 RBMY2OP RNA binding motif protein Y-linked family 2 member O, pseudogene 2.3219 0.0004
2 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0454 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 1.9450 0.0000
4 ENSG00000202034 RNU6-399P RNA, U6 small nuclear 399, pseudogene 1.6667 0.0000
5 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.6228 0.0000
6 ENSG00000186562 DEFB105A defensin beta 105A 1.5850 0.0004
7 ENSG00000186579 DEFB106A defensin beta 106A 1.5850 0.0004
8 ENSG00000206719 Y RNA 1.5850 0.0190
9 ENSG00000207139 Y RNA 1.5850 0.0190
10 ENSG00000212409 RNY4P18 RNY4 pseudogene 18 1.5850 0.0190

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000254768 novel transcript -2.0247 0.0000
63127 ENSG00000168528 SERINC2 serine incorporator 2 -2.0246 0.0000
63126 ENSG00000252839 RNU6-419P RNA, U6 small nuclear 419, pseudogene -2.0245 0.0000
63125 ENSG00000236875 DDX11L5 DEAD/H-box helicase 11 like 5 (pseudogene) -2.0243 0.0000
63124 ENSG00000255811 novel transcript, antisense to GJB4 and GJB3 -2.0236 0.0000
63123 ENSG00000271555 novel transcript, sense intronic KANK1 -2.0234 0.0000
63122 ENSG00000148730 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -2.0233 0.0000
63121 ENSG00000183340 JRKL JRK like -2.0231 0.0000
63120 ENSG00000100626 GALNT16 polypeptide N-acetylgalactosaminyltransferase 16 -2.0229 0.0000
63119 ENSG00000230864 novel transcript -2.0226 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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