SHOGoiN Cell Methylome: GSM2773631

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773631


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M258Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234950 RBMY2OP RNA binding motif protein, Y-linked, family 2, member O pseudogene 2.3219 0.0004
2 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0454 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 1.9450 0.0000
4 ENSG00000202034 RNU6-399P RNA, U6 small nuclear 399, pseudogene 1.6667 0.0000
5 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.6228 0.0000
6 ENSG00000186562 DEFB105A defensin beta 105A 1.5850 0.0004
7 ENSG00000186579 DEFB106A defensin beta 106A 1.5850 0.0004
8 ENSG00000206719 NA 1.5850 0.0190
9 ENSG00000207139 NA 1.5850 0.0190
10 ENSG00000212409 RNY4P18 RNY4 pseudogene 18 1.5850 0.0190

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000164669 INTS4P1 integrator complex subunit 4 pseudogene 1 -2.0805 0.0000
63340 ENSG00000276509 novel transcript -2.0805 0.0000
63339 ENSG00000233069 novel transcript -2.0800 0.0000
63338 ENSG00000260750 novel transcript -2.0799 0.0000
63337 ENSG00000275219 NA -2.0795 0.0000
63336 ENSG00000166681 BEX3 brain expressed X-linked 3 -2.0795 0.0000
63335 ENSG00000196227 FAM217B family with sequence similarity 217 member B -2.0794 0.0000
63334 ENSG00000198162 MAN1A2 mannosidase alpha class 1A member 2 -2.0793 0.0000
63333 ENSG00000279269 novel transcript -2.0792 0.0000
63332 ENSG00000163499 CRYBA2 crystallin beta A2 -2.0790 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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