Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773631

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773631 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M258	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000234950	RBMY2OP	RNA binding motif protein Y-linked family 2 member O, pseudogene	2.3219	0.0004
2	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	2.0454	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	1.9450	0.0000
4	ENSG00000202034	RNU6-399P	RNA, U6 small nuclear 399, pseudogene	1.6667	0.0000
5	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	1.6228	0.0000
6	ENSG00000186562	DEFB105A	defensin beta 105A	1.5850	0.0004
7	ENSG00000186579	DEFB106A	defensin beta 106A	1.5850	0.0004
8	ENSG00000206719		Y RNA	1.5850	0.0190
9	ENSG00000207139		Y RNA	1.5850	0.0190
10	ENSG00000212409	RNY4P18	RNY4 pseudogene 18	1.5850	0.0190

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000254768		novel transcript	-2.0247	0.0000
63127	ENSG00000168528	SERINC2	serine incorporator 2	-2.0246	0.0000
63126	ENSG00000252839	RNU6-419P	RNA, U6 small nuclear 419, pseudogene	-2.0245	0.0000
63125	ENSG00000236875	DDX11L5	DEAD/H-box helicase 11 like 5 (pseudogene)	-2.0243	0.0000
63124	ENSG00000255811		novel transcript, antisense to GJB4 and GJB3	-2.0236	0.0000
63123	ENSG00000271555		novel transcript, sense intronic KANK1	-2.0234	0.0000
63122	ENSG00000148730	EIF4EBP2	eukaryotic translation initiation factor 4E binding protein 2	-2.0233	0.0000
63121	ENSG00000183340	JRKL	JRK like	-2.0231	0.0000
63120	ENSG00000100626	GALNT16	polypeptide N-acetylgalactosaminyltransferase 16	-2.0229	0.0000
63119	ENSG00000230864		novel transcript	-2.0226	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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