SHOGoiN Cell Methylome: GSM2773631
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773631 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M258 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000234950 | RBMY2OP | RNA binding motif protein, Y-linked, family 2, member O pseudogene | 2.3219 | 0.0004 |
| 2 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 2.0454 | 0.0000 |
| 3 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 1.9450 | 0.0000 | |
| 4 | ENSG00000202034 | RNU6-399P | RNA, U6 small nuclear 399, pseudogene | 1.6667 | 0.0000 |
| 5 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 1.6228 | 0.0000 |
| 6 | ENSG00000186562 | DEFB105A | defensin beta 105A | 1.5850 | 0.0004 |
| 7 | ENSG00000186579 | DEFB106A | defensin beta 106A | 1.5850 | 0.0004 |
| 8 | ENSG00000206719 | NA | 1.5850 | 0.0190 | |
| 9 | ENSG00000207139 | NA | 1.5850 | 0.0190 | |
| 10 | ENSG00000212409 | RNY4P18 | RNY4 pseudogene 18 | 1.5850 | 0.0190 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000164669 | INTS4P1 | integrator complex subunit 4 pseudogene 1 | -2.0805 | 0.0000 |
| 63340 | ENSG00000276509 | novel transcript | -2.0805 | 0.0000 | |
| 63339 | ENSG00000233069 | novel transcript | -2.0800 | 0.0000 | |
| 63338 | ENSG00000260750 | novel transcript | -2.0799 | 0.0000 | |
| 63337 | ENSG00000275219 | NA | -2.0795 | 0.0000 | |
| 63336 | ENSG00000166681 | BEX3 | brain expressed X-linked 3 | -2.0795 | 0.0000 |
| 63335 | ENSG00000196227 | FAM217B | family with sequence similarity 217 member B | -2.0794 | 0.0000 |
| 63334 | ENSG00000198162 | MAN1A2 | mannosidase alpha class 1A member 2 | -2.0793 | 0.0000 |
| 63333 | ENSG00000279269 | novel transcript | -2.0792 | 0.0000 | |
| 63332 | ENSG00000163499 | CRYBA2 | crystallin beta A2 | -2.0790 | 0.0000 |
