Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773631
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773631
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M258
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000234950
RBMY2OP
RNA binding motif protein Y-linked family 2 member O, pseudogene
2.3219
0.0004
2
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
2.0454
0.0000
3
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
1.9450
0.0000
4
ENSG00000202034
RNU6-399P
RNA, U6 small nuclear 399, pseudogene
1.6667
0.0000
5
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
1.6228
0.0000
6
ENSG00000186562
DEFB105A
defensin beta 105A
1.5850
0.0004
7
ENSG00000186579
DEFB106A
defensin beta 106A
1.5850
0.0004
8
ENSG00000206719
Y RNA
1.5850
0.0190
9
ENSG00000207139
Y RNA
1.5850
0.0190
10
ENSG00000212409
RNY4P18
RNY4 pseudogene 18
1.5850
0.0190
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000254768
novel transcript
-2.0247
0.0000
63127
ENSG00000168528
SERINC2
serine incorporator 2
-2.0246
0.0000
63126
ENSG00000252839
RNU6-419P
RNA, U6 small nuclear 419, pseudogene
-2.0245
0.0000
63125
ENSG00000236875
DDX11L5
DEAD/H-box helicase 11 like 5 (pseudogene)
-2.0243
0.0000
63124
ENSG00000255811
novel transcript, antisense to GJB4 and GJB3
-2.0236
0.0000
63123
ENSG00000271555
novel transcript, sense intronic KANK1
-2.0234
0.0000
63122
ENSG00000148730
EIF4EBP2
eukaryotic translation initiation factor 4E binding protein 2
-2.0233
0.0000
63121
ENSG00000183340
JRKL
JRK like
-2.0231
0.0000
63120
ENSG00000100626
GALNT16
polypeptide N-acetylgalactosaminyltransferase 16
-2.0229
0.0000
63119
ENSG00000230864
novel transcript
-2.0226
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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