SHOGoiN Cell Methylome: GSM2773632

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773632


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M259Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202225 RNA5SP240 RNA, 5S ribosomal pseudogene 240 2.8074 0.0000
2 ENSG00000270257 small EDRK-rich factor 2 (SERF2) pseudogene 2.6311 0.0000
3 ENSG00000273461 novel transcript 2.5850 0.0000
4 ENSG00000277448 LINC02338 long intergenic non-protein coding RNA 2338 2.5850 0.0000
5 ENSG00000283528 TCAF2C TRPM8 channel associated factor 2C 2.5850 0.0000
6 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.5222 0.0000
7 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 2.3219 0.0003
8 ENSG00000248987 PRDX4P1 peroxiredoxin 4 pseudogene 1 2.3219 0.0000
9 ENSG00000253334 novel transcript, antisense to SNX16 2.3219 0.0003
10 ENSG00000254437 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000164171 ITGA2 integrin subunit alpha 2 -2.1746 0.0000
63340 ENSG00000236897 novel transcript -2.1745 0.1553
63339 ENSG00000121377 TAS2R7 taste 2 receptor member 7 -2.1745 0.1553
63338 ENSG00000272721 novel transcript, antisense to EIF2B5 -2.1743 0.0000
63337 ENSG00000239323 ribosomal protein L9 (RPL9) pseudogene -2.1740 0.0000
63336 ENSG00000133116 KL klotho -2.1737 0.0009
63335 ENSG00000257191 novel transcript, antisense to SYT1 -2.1731 0.0045
63334 ENSG00000050393 MCUR1 mitochondrial calcium uniporter regulator 1 -2.1718 0.0000
63333 ENSG00000263811 MIR3675 microRNA 3675 -2.1714 0.0000
63332 ENSG00000277386 novel transcript, sense intronic to STARD13 -2.1710 0.0006

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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