Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773632

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773632


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M259Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202225 RNA5SP240 RNA, 5S ribosomal pseudogene 240 2.8074 0.0000
2 ENSG00000270257 small EDRK-rich factor 2 (SERF2) pseudogene 2.6311 0.0000
3 ENSG00000273461 novel transcript 2.5850 0.0000
4 ENSG00000277448 LINC02338 long intergenic non-protein coding RNA 2338 2.5850 0.0000
5 ENSG00000283528 TCAF2C TRPM8 channel associated factor 2C 2.5850 0.0000
6 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.5222 0.0000
7 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 2.3219 0.0003
8 ENSG00000248987 PRDX4P1 peroxiredoxin 4 pseudogene 1 2.3219 0.0000
9 ENSG00000253334 novel transcript, antisense to SNX16 2.3219 0.0003
10 ENSG00000254437 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000149243 KLHL35 kelch like family member 35 -2.1057 0.0000
63127 ENSG00000168036 CTNNB1 catenin beta 1 -2.1057 0.0000
63126 ENSG00000196972 SMIM10L2B small integral membrane protein 10 like 2B -2.1049 0.0000
63125 ENSG00000120063 GNA13 G protein subunit alpha 13 -2.1046 0.0000
63124 ENSG00000174607 UGT8 UDP glycosyltransferase 8 -2.1046 0.0000
63123 ENSG00000249662 LINC02218 long intergenic non-protein coding RNA 2218 -2.1044 0.0002
63122 ENSG00000229327 novel transcript -2.1043 0.0000
63121 ENSG00000057252 SOAT1 sterol O-acyltransferase 1 -2.1041 0.0000
63120 ENSG00000227578 RPS3AP53 RPS3A pseudogene 53 -2.1040 0.0425
63119 ENSG00000231914 LINC00387 long intergenic non-protein coding RNA 387 -2.1037 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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