Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773632
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773632
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M259
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000202225
RNA5SP240
RNA, 5S ribosomal pseudogene 240
2.8074
0.0000
2
ENSG00000270257
small EDRK-rich factor 2 (SERF2) pseudogene
2.6311
0.0000
3
ENSG00000273461
novel transcript
2.5850
0.0000
4
ENSG00000277448
LINC02338
long intergenic non-protein coding RNA 2338
2.5850
0.0000
5
ENSG00000283528
TCAF2C
TRPM8 channel associated factor 2C
2.5850
0.0000
6
ENSG00000183122
OR2A3P
olfactory receptor family 2 subfamily A member 3 pseudogene
2.5222
0.0000
7
ENSG00000213046
EEF1A1P32
eukaryotic translation elongation factor 1 alpha 1 pseudogene 32
2.3219
0.0003
8
ENSG00000248987
PRDX4P1
peroxiredoxin 4 pseudogene 1
2.3219
0.0000
9
ENSG00000253334
novel transcript, antisense to SNX16
2.3219
0.0003
10
ENSG00000254437
cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000149243
KLHL35
kelch like family member 35
-2.1057
0.0000
63127
ENSG00000168036
CTNNB1
catenin beta 1
-2.1057
0.0000
63126
ENSG00000196972
SMIM10L2B
small integral membrane protein 10 like 2B
-2.1049
0.0000
63125
ENSG00000120063
GNA13
G protein subunit alpha 13
-2.1046
0.0000
63124
ENSG00000174607
UGT8
UDP glycosyltransferase 8
-2.1046
0.0000
63123
ENSG00000249662
LINC02218
long intergenic non-protein coding RNA 2218
-2.1044
0.0002
63122
ENSG00000229327
novel transcript
-2.1043
0.0000
63121
ENSG00000057252
SOAT1
sterol O-acyltransferase 1
-2.1041
0.0000
63120
ENSG00000227578
RPS3AP53
RPS3A pseudogene 53
-2.1040
0.0425
63119
ENSG00000231914
LINC00387
long intergenic non-protein coding RNA 387
-2.1037
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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