SHOGoiN Cell Methylome: GSM2773632
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773632 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M259 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000202225 | RNA5SP240 | RNA, 5S ribosomal pseudogene 240 | 2.8074 | 0.0000 |
| 2 | ENSG00000270257 | small EDRK-rich factor 2 (SERF2) pseudogene | 2.6311 | 0.0000 | |
| 3 | ENSG00000273461 | novel transcript | 2.5850 | 0.0000 | |
| 4 | ENSG00000277448 | LINC02338 | long intergenic non-protein coding RNA 2338 | 2.5850 | 0.0000 |
| 5 | ENSG00000283528 | TCAF2C | TRPM8 channel associated factor 2C | 2.5850 | 0.0000 |
| 6 | ENSG00000183122 | OR2A3P | olfactory receptor family 2 subfamily A member 3 pseudogene | 2.5222 | 0.0000 |
| 7 | ENSG00000213046 | EEF1A1P32 | eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 | 2.3219 | 0.0003 |
| 8 | ENSG00000248987 | PRDX4P1 | peroxiredoxin 4 pseudogene 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000253334 | novel transcript, antisense to SNX16 | 2.3219 | 0.0003 | |
| 10 | ENSG00000254437 | cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000164171 | ITGA2 | integrin subunit alpha 2 | -2.1746 | 0.0000 |
| 63340 | ENSG00000236897 | novel transcript | -2.1745 | 0.1553 | |
| 63339 | ENSG00000121377 | TAS2R7 | taste 2 receptor member 7 | -2.1745 | 0.1553 |
| 63338 | ENSG00000272721 | novel transcript, antisense to EIF2B5 | -2.1743 | 0.0000 | |
| 63337 | ENSG00000239323 | ribosomal protein L9 (RPL9) pseudogene | -2.1740 | 0.0000 | |
| 63336 | ENSG00000133116 | KL | klotho | -2.1737 | 0.0009 |
| 63335 | ENSG00000257191 | novel transcript, antisense to SYT1 | -2.1731 | 0.0045 | |
| 63334 | ENSG00000050393 | MCUR1 | mitochondrial calcium uniporter regulator 1 | -2.1718 | 0.0000 |
| 63333 | ENSG00000263811 | MIR3675 | microRNA 3675 | -2.1714 | 0.0000 |
| 63332 | ENSG00000277386 | novel transcript, sense intronic to STARD13 | -2.1710 | 0.0006 |
