SHOGoiN Cell Methylome: GSM2773633

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773633


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M260Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231615 novel pseudogene 3.1699 0.0000
2 ENSG00000253539 novel transcript 3.0000 0.0000
3 ENSG00000257272 novel transcript 3.0000 0.0000
4 ENSG00000226253 MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 2.8209 0.0000
5 ENSG00000232342 novel transcript 2.8209 0.0000
6 ENSG00000201676 NA 2.8074 0.0000
7 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.8074 0.0000
8 ENSG00000261158 novel transcript, antisense to CPPED1 2.8074 0.0000
9 ENSG00000197919 IFNA1 interferon alpha 1 2.5850 0.0000
10 ENSG00000200033 RNU6-403P RNA, U6 small nuclear 403, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -1.8553 0.0000
63340 ENSG00000253186 coiled-coil domain containing 144 (CCDC144) pseudogene -1.8552 0.0000
63339 ENSG00000181754 AMIGO1 adhesion molecule with Ig like domain 1 -1.8550 0.0000
63338 ENSG00000267355 RPL9P29 ribosomal protein L9 pseudogene 29 -1.8549 0.0000
63337 ENSG00000228421 novel transcript -1.8548 0.0000
63336 ENSG00000272341 novel transcript -1.8544 0.0000
63335 ENSG00000264063 NA -1.8543 0.0000
63334 ENSG00000273062 novel transcript, antisense to RALGPS2 -1.8539 0.0000
63333 ENSG00000169193 CCDC126 coiled-coil domain containing 126 -1.8529 0.0000
63332 ENSG00000264268 MIR4767 microRNA 4767 -1.8522 0.0017

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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