Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773633

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773633


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M260Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231615 novel pseudogene 3.1699 0.0000
2 ENSG00000253539 novel transcript 3.0000 0.0000
3 ENSG00000257272 novel transcript 3.0000 0.0000
4 ENSG00000226253 MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 2.8209 0.0000
5 ENSG00000232342 novel transcript 2.8209 0.0000
6 ENSG00000201676 Y RNA 2.8074 0.0000
7 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.8074 0.0000
8 ENSG00000261158 novel transcript, antisense to CPPED1 2.8074 0.0000
9 ENSG00000197919 IFNA1 interferon alpha 1 2.5850 0.0000
10 ENSG00000200033 RNU6-403P RNA, U6 small nuclear 403, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000182968 SOX1 SRY-box transcription factor 1 -1.7907 0.0000
63127 ENSG00000085377 PREP prolyl endopeptidase -1.7906 0.0000
63126 ENSG00000252604 RNU2-44P RNA, U2 small nuclear 44, pseudogene -1.7902 0.0000
63125 ENSG00000163297 ANTXR2 ANTXR cell adhesion molecule 2 -1.7901 0.0000
63124 ENSG00000221890 NPTXR neuronal pentraxin receptor -1.7899 0.0000
63123 ENSG00000169629 RGPD8 RANBP2 like and GRIP domain containing 8 -1.7894 0.0000
63122 ENSG00000184221 OLIG1 oligodendrocyte transcription factor 1 -1.7885 0.0000
63121 ENSG00000256571 novel transcript -1.7882 0.0380
63120 ENSG00000178718 RPP25 ribonuclease P and MRP subunit p25 -1.7870 0.0000
63119 ENSG00000207097 RNU6-614P RNA, U6 small nuclear 614, pseudogene -1.7863 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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