Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773634
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773634
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M261
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000166664
CHRFAM7A
CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion
2.5850
0.0000
2
ENSG00000259528
novel transcript, antisense to NEO1
2.5850
0.0000
3
ENSG00000263070
unc-51-like kinase 4 (C. elegans) (ULK4) pseudogene
2.5850
0.0000
4
ENSG00000201563
Y RNA
2.3219
0.0000
5
ENSG00000278462
novel transcript, sense intronic to LRCH1
2.3219
0.0003
6
ENSG00000230902
FAM204CP
family with sequence similarity 204 member C, pseudogene
2.1610
0.0000
7
ENSG00000254931
MTATP6P15
MT-ATP6 pseudogene 15
2.0763
0.0000
8
ENSG00000255417
MTCO2P15
MT-CO2 pseudogene 15
2.0763
0.0000
9
ENSG00000270857
ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene
2.0741
0.0000
10
ENSG00000150261
OR8K1
olfactory receptor family 8 subfamily K member 1
2.0000
0.0020
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000182040
USH1G
USH1 protein network component sans
-2.0366
0.0000
63127
ENSG00000179240
GVQW3
GVQW motif containing 3
-2.0365
0.0000
63126
ENSG00000205502
C2CD4B
C2 calcium dependent domain containing 4B
-2.0365
0.0000
63125
ENSG00000226268
solute carrier family 25, member 33 (SLC25A33) pseudogene
-2.0360
0.0009
63124
ENSG00000259555
novel transcript, antisense to CHRNB4
-2.0359
0.0000
63123
ENSG00000259952
novel transcript, antisense to MAZ
-2.0343
0.0000
63122
ENSG00000188707
ZBED6CL
ZBED6 C-terminal like
-2.0342
0.0000
63121
ENSG00000168967
PMCHL1
pro-melanin concentrating hormone like 1 (pseudogene)
-2.0333
0.0996
63120
ENSG00000185668
POU3F1
POU class 3 homeobox 1
-2.0332
0.0000
63119
ENSG00000070601
FRMPD1
FERM and PDZ domain containing 1
-2.0331
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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