Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773634

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773634


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M261Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000166664 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2.5850 0.0000
2 ENSG00000259528 novel transcript, antisense to NEO1 2.5850 0.0000
3 ENSG00000263070 unc-51-like kinase 4 (C. elegans) (ULK4) pseudogene 2.5850 0.0000
4 ENSG00000201563 Y RNA 2.3219 0.0000
5 ENSG00000278462 novel transcript, sense intronic to LRCH1 2.3219 0.0003
6 ENSG00000230902 FAM204CP family with sequence similarity 204 member C, pseudogene 2.1610 0.0000
7 ENSG00000254931 MTATP6P15 MT-ATP6 pseudogene 15 2.0763 0.0000
8 ENSG00000255417 MTCO2P15 MT-CO2 pseudogene 15 2.0763 0.0000
9 ENSG00000270857 ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene 2.0741 0.0000
10 ENSG00000150261 OR8K1 olfactory receptor family 8 subfamily K member 1 2.0000 0.0020

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000182040 USH1G USH1 protein network component sans -2.0366 0.0000
63127 ENSG00000179240 GVQW3 GVQW motif containing 3 -2.0365 0.0000
63126 ENSG00000205502 C2CD4B C2 calcium dependent domain containing 4B -2.0365 0.0000
63125 ENSG00000226268 solute carrier family 25, member 33 (SLC25A33) pseudogene -2.0360 0.0009
63124 ENSG00000259555 novel transcript, antisense to CHRNB4 -2.0359 0.0000
63123 ENSG00000259952 novel transcript, antisense to MAZ -2.0343 0.0000
63122 ENSG00000188707 ZBED6CL ZBED6 C-terminal like -2.0342 0.0000
63121 ENSG00000168967 PMCHL1 pro-melanin concentrating hormone like 1 (pseudogene) -2.0333 0.0996
63120 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -2.0332 0.0000
63119 ENSG00000070601 FRMPD1 FERM and PDZ domain containing 1 -2.0331 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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