SHOGoiN Cell Methylome: GSM2773634
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773634 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M261 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000166664 | CHRFAM7A | CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion | 2.5850 | 0.0000 |
| 2 | ENSG00000259528 | novel transcript, antisense to NEO1 | 2.5850 | 0.0000 | |
| 3 | ENSG00000263070 | unc-51-like kinase 4 (C. elegans) (ULK4) pseudogene | 2.5850 | 0.0000 | |
| 4 | ENSG00000201563 | NA | 2.3219 | 0.0000 | |
| 5 | ENSG00000278462 | novel transcript, sense intronic to LRCH1 | 2.3219 | 0.0003 | |
| 6 | ENSG00000230902 | FAM204CP | family with sequence similarity 204 member C, pseudogene | 2.1610 | 0.0000 |
| 7 | ENSG00000254931 | MTATP6P15 | MT-ATP6 pseudogene 15 | 2.0763 | 0.0000 |
| 8 | ENSG00000255417 | MTCO2P15 | MT-CO2 pseudogene 15 | 2.0763 | 0.0000 |
| 9 | ENSG00000270857 | ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene | 2.0741 | 0.0000 | |
| 10 | ENSG00000150261 | OR8K1 | olfactory receptor family 8 subfamily K member 1 | 2.0000 | 0.0020 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000276949 | galactose-3-O-sulfotransferase 1 (GAL3ST1) pseudogene | -2.1016 | 0.0004 | |
| 63340 | ENSG00000226237 | GAS1RR | GAS1 adjacent regulatory RNA | -2.1012 | 0.0000 |
| 63339 | ENSG00000237568 | novel transcript | -2.1011 | 0.0009 | |
| 63338 | ENSG00000231788 | RPL31P50 | ribosomal protein L31 pseudogene 50 | -2.1007 | 0.0000 |
| 63337 | ENSG00000264293 | RN7SL657P | RNA, 7SL, cytoplasmic 657, pseudogene | -2.1002 | 0.0000 |
| 63336 | ENSG00000268583 | novel transcript, antisense to CARD8 | -2.1001 | 0.0000 | |
| 63335 | ENSG00000278887 | SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) (SLX1A) pseudogene | -2.0998 | 0.0000 | |
| 63334 | ENSG00000278022 | novel transcript, sense intronic to IGF1R | -2.0990 | 0.0000 | |
| 63333 | ENSG00000253817 | pre-B lymphocyte 1 (VPREB1) pseudogene | -2.0986 | 0.0000 | |
| 63332 | ENSG00000135338 | LCA5 | lebercilin LCA5 | -2.0984 | 0.0003 |
