SHOGoiN Cell Methylome: GSM2773634

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773634


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M261Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000166664 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2.5850 0.0000
2 ENSG00000259528 novel transcript, antisense to NEO1 2.5850 0.0000
3 ENSG00000263070 unc-51-like kinase 4 (C. elegans) (ULK4) pseudogene 2.5850 0.0000
4 ENSG00000201563 NA 2.3219 0.0000
5 ENSG00000278462 novel transcript, sense intronic to LRCH1 2.3219 0.0003
6 ENSG00000230902 FAM204CP family with sequence similarity 204 member C, pseudogene 2.1610 0.0000
7 ENSG00000254931 MTATP6P15 MT-ATP6 pseudogene 15 2.0763 0.0000
8 ENSG00000255417 MTCO2P15 MT-CO2 pseudogene 15 2.0763 0.0000
9 ENSG00000270857 ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene 2.0741 0.0000
10 ENSG00000150261 OR8K1 olfactory receptor family 8 subfamily K member 1 2.0000 0.0020

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000276949 galactose-3-O-sulfotransferase 1 (GAL3ST1) pseudogene -2.1016 0.0004
63340 ENSG00000226237 GAS1RR GAS1 adjacent regulatory RNA -2.1012 0.0000
63339 ENSG00000237568 novel transcript -2.1011 0.0009
63338 ENSG00000231788 RPL31P50 ribosomal protein L31 pseudogene 50 -2.1007 0.0000
63337 ENSG00000264293 RN7SL657P RNA, 7SL, cytoplasmic 657, pseudogene -2.1002 0.0000
63336 ENSG00000268583 novel transcript, antisense to CARD8 -2.1001 0.0000
63335 ENSG00000278887 SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae) (SLX1A) pseudogene -2.0998 0.0000
63334 ENSG00000278022 novel transcript, sense intronic to IGF1R -2.0990 0.0000
63333 ENSG00000253817 pre-B lymphocyte 1 (VPREB1) pseudogene -2.0986 0.0000
63332 ENSG00000135338 LCA5 lebercilin LCA5 -2.0984 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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