SHOGoiN Cell Methylome: GSM2773635
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773635 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M262 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000280136 | novel transcript | 3.0567 | 0.0000 | |
| 2 | ENSG00000271652 | chromosome X open reading frame 40A (CXorf40A) pseudogene | 3.0000 | 0.0000 | |
| 3 | ENSG00000229257 | novel transcript, antisense to SAPCD2 | 2.9818 | 0.0000 | |
| 4 | ENSG00000232835 | novel transcript | 2.8738 | 0.0000 | |
| 5 | ENSG00000274383 | novel transcript, antisense to ANKDD1A | 2.6860 | 0.0000 | |
| 6 | ENSG00000275332 | novel transcript, antisense to ANKDD1A | 2.6860 | 0.0000 | |
| 7 | ENSG00000279439 | TEC | 2.6346 | 0.0000 | |
| 8 | ENSG00000199735 | RNU6-227P | RNA, U6 small nuclear 227, pseudogene | 2.6290 | 0.0000 |
| 9 | ENSG00000188656 | TSPY7P | testis specific protein Y-linked 7, pseudogene | 2.5850 | 0.0217 |
| 10 | ENSG00000222145 | NA | 2.5850 | 0.0005 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000274798 | novel transcript | -1.4151 | 0.0000 | |
| 63340 | ENSG00000265545 | transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene | -1.4149 | 0.0000 | |
| 63339 | ENSG00000179840 | PIK3CD-AS1 | PIK3CD antisense RNA 1 | -1.4141 | 0.0000 |
| 63338 | ENSG00000213994 | novel transcript | -1.4136 | 0.0000 | |
| 63337 | ENSG00000165244 | ZNF367 | zinc finger protein 367 | -1.4134 | 0.0000 |
| 63336 | ENSG00000179335 | CLK3 | CDC like kinase 3 | -1.4125 | 0.0000 |
| 63335 | ENSG00000175536 | LIPT2 | lipoyl(octanoyl) transferase 2 | -1.4124 | 0.0000 |
| 63334 | ENSG00000258778 | eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2) pseudogene | -1.4117 | 0.0000 | |
| 63333 | ENSG00000253406 | novel transcript, antisense to ABLIM3 | -1.4115 | 0.0000 | |
| 63332 | ENSG00000248647 | novel transcript | -1.4115 | 0.0000 |
