Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773635

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773635 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M262	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000280136		novel transcript	3.0567	0.0000
2	ENSG00000271652		chromosome X open reading frame 40A (CXorf40A) pseudogene	3.0000	0.0000
3	ENSG00000229257		novel transcript, antisense to SAPCD2	2.9818	0.0000
4	ENSG00000232835		novel transcript	2.8738	0.0000
5	ENSG00000274383		novel transcript, antisense to ANKDD1A	2.6860	0.0000
6	ENSG00000275332		novel transcript, antisense to ANKDD1A	2.6860	0.0000
7	ENSG00000279439		TEC	2.6346	0.0000
8	ENSG00000199735	RNU6-227P	RNA, U6 small nuclear 227, pseudogene	2.6290	0.0000
9	ENSG00000188656	TSPY7P	testis specific protein Y-linked 7, pseudogene	2.5850	0.0217
10	ENSG00000222145		Small nucleolar RNA SNORA73 family	2.5850	0.0005

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000169297	NR0B1	nuclear receptor subfamily 0 group B member 1	-1.3464	0.0000
63127	ENSG00000269050		novel transcript, antisense to RINL	-1.3460	0.0000
63126	ENSG00000154473	BUB3	BUB3 mitotic checkpoint protein	-1.3450	0.0000
63125	ENSG00000257674		insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) pseudogene	-1.3442	0.0000
63124	ENSG00000253390		novel transcript	-1.3439	0.0000
63123	ENSG00000259294		novel transcript, antisense to CUX1	-1.3432	0.0000
63122	ENSG00000274507		novel transcript, antisense to PYGB	-1.3428	0.0000
63121	ENSG00000276406		novel transcript	-1.3423	0.0000
63120	ENSG00000166090	IL25	interleukin 25	-1.3422	0.0000
63119	ENSG00000229873	OGFR-AS1	OGFR antisense RNA 1	-1.3420	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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