Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773635
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773635
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M262
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000280136
novel transcript
3.0567
0.0000
2
ENSG00000271652
chromosome X open reading frame 40A (CXorf40A) pseudogene
3.0000
0.0000
3
ENSG00000229257
novel transcript, antisense to SAPCD2
2.9818
0.0000
4
ENSG00000232835
novel transcript
2.8738
0.0000
5
ENSG00000274383
novel transcript, antisense to ANKDD1A
2.6860
0.0000
6
ENSG00000275332
novel transcript, antisense to ANKDD1A
2.6860
0.0000
7
ENSG00000279439
TEC
2.6346
0.0000
8
ENSG00000199735
RNU6-227P
RNA, U6 small nuclear 227, pseudogene
2.6290
0.0000
9
ENSG00000188656
TSPY7P
testis specific protein Y-linked 7, pseudogene
2.5850
0.0217
10
ENSG00000222145
Small nucleolar RNA SNORA73 family
2.5850
0.0005
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000169297
NR0B1
nuclear receptor subfamily 0 group B member 1
-1.3464
0.0000
63127
ENSG00000269050
novel transcript, antisense to RINL
-1.3460
0.0000
63126
ENSG00000154473
BUB3
BUB3 mitotic checkpoint protein
-1.3450
0.0000
63125
ENSG00000257674
insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) pseudogene
-1.3442
0.0000
63124
ENSG00000253390
novel transcript
-1.3439
0.0000
63123
ENSG00000259294
novel transcript, antisense to CUX1
-1.3432
0.0000
63122
ENSG00000274507
novel transcript, antisense to PYGB
-1.3428
0.0000
63121
ENSG00000276406
novel transcript
-1.3423
0.0000
63120
ENSG00000166090
IL25
interleukin 25
-1.3422
0.0000
63119
ENSG00000229873
OGFR-AS1
OGFR antisense RNA 1
-1.3420
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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