Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773635

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773635


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M262Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280136 novel transcript 3.0567 0.0000
2 ENSG00000271652 chromosome X open reading frame 40A (CXorf40A) pseudogene 3.0000 0.0000
3 ENSG00000229257 novel transcript, antisense to SAPCD2 2.9818 0.0000
4 ENSG00000232835 novel transcript 2.8738 0.0000
5 ENSG00000274383 novel transcript, antisense to ANKDD1A 2.6860 0.0000
6 ENSG00000275332 novel transcript, antisense to ANKDD1A 2.6860 0.0000
7 ENSG00000279439 TEC 2.6346 0.0000
8 ENSG00000199735 RNU6-227P RNA, U6 small nuclear 227, pseudogene 2.6290 0.0000
9 ENSG00000188656 TSPY7P testis specific protein Y-linked 7, pseudogene 2.5850 0.0217
10 ENSG00000222145 Small nucleolar RNA SNORA73 family 2.5850 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000169297 NR0B1 nuclear receptor subfamily 0 group B member 1 -1.3464 0.0000
63127 ENSG00000269050 novel transcript, antisense to RINL -1.3460 0.0000
63126 ENSG00000154473 BUB3 BUB3 mitotic checkpoint protein -1.3450 0.0000
63125 ENSG00000257674 insulin-like growth factor 2 mRNA binding protein 2 (IGF2BP2) pseudogene -1.3442 0.0000
63124 ENSG00000253390 novel transcript -1.3439 0.0000
63123 ENSG00000259294 novel transcript, antisense to CUX1 -1.3432 0.0000
63122 ENSG00000274507 novel transcript, antisense to PYGB -1.3428 0.0000
63121 ENSG00000276406 novel transcript -1.3423 0.0000
63120 ENSG00000166090 IL25 interleukin 25 -1.3422 0.0000
63119 ENSG00000229873 OGFR-AS1 OGFR antisense RNA 1 -1.3420 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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