SHOGoiN Cell Methylome: GSM2773635

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773635


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M262Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280136 novel transcript 3.0567 0.0000
2 ENSG00000271652 chromosome X open reading frame 40A (CXorf40A) pseudogene 3.0000 0.0000
3 ENSG00000229257 novel transcript, antisense to SAPCD2 2.9818 0.0000
4 ENSG00000232835 novel transcript 2.8738 0.0000
5 ENSG00000274383 novel transcript, antisense to ANKDD1A 2.6860 0.0000
6 ENSG00000275332 novel transcript, antisense to ANKDD1A 2.6860 0.0000
7 ENSG00000279439 TEC 2.6346 0.0000
8 ENSG00000199735 RNU6-227P RNA, U6 small nuclear 227, pseudogene 2.6290 0.0000
9 ENSG00000188656 TSPY7P testis specific protein Y-linked 7, pseudogene 2.5850 0.0217
10 ENSG00000222145 NA 2.5850 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000274798 novel transcript -1.4151 0.0000
63340 ENSG00000265545 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) (TCEB1) pseudogene -1.4149 0.0000
63339 ENSG00000179840 PIK3CD-AS1 PIK3CD antisense RNA 1 -1.4141 0.0000
63338 ENSG00000213994 novel transcript -1.4136 0.0000
63337 ENSG00000165244 ZNF367 zinc finger protein 367 -1.4134 0.0000
63336 ENSG00000179335 CLK3 CDC like kinase 3 -1.4125 0.0000
63335 ENSG00000175536 LIPT2 lipoyl(octanoyl) transferase 2 -1.4124 0.0000
63334 ENSG00000258778 eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa (EIF2S2) pseudogene -1.4117 0.0000
63333 ENSG00000253406 novel transcript, antisense to ABLIM3 -1.4115 0.0000
63332 ENSG00000248647 novel transcript -1.4115 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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