Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773636
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773636
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M263
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000274973
BSNDP2
BSND pseudogene 2
3.1699
0.0000
2
ENSG00000197713
RPE
ribulose-5-phosphate-3-epimerase
3.1143
0.0000
3
ENSG00000224083
MTCO1P11
MT-CO1 pseudogene 11
3.0000
0.0000
4
ENSG00000228166
MTND1P11
MT-ND1 pseudogene 11
3.0000
0.0000
5
ENSG00000260088
DDX59-AS1
DDX59 antisense RNA 1
3.0000
0.0000
6
ENSG00000271249
DIMT1P1
DIM1 dimethyladenosine transferase 1 homolog pseudogene 1
2.8074
0.0000
7
ENSG00000274755
U2 spliceosomal RNA
2.6958
0.0000
8
ENSG00000221783
MIR1183
microRNA 1183
2.6779
0.0000
9
ENSG00000228625
novel transcript
2.5850
0.0001
10
ENSG00000251888
RN7SKP190
RN7SK pseudogene 190
2.5850
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000241612
ribosomal protein L21 (RPL21) pseudogene
-2.3219
1.0000
63127
ENSG00000240667
NBPF18P
NBPF member 18, pseudogene
-2.3219
0.3936
63126
ENSG00000237824
RPL23AP33
ribosomal protein L23a pseudogene 33
-2.3219
1.0000
63125
ENSG00000236822
NMBR-AS1
NMBR antisense RNA 1
-2.3219
0.1514
63124
ENSG00000236686
BZW1P1
basic leucine zipper and W2 domains 1 pseudogene 1
-2.3219
0.3936
63123
ENSG00000236493
EIF2S2P3
eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 3
-2.3219
0.0995
63122
ENSG00000236179
PRAMEF35P
PRAME family member 35, pseudogene
-2.3219
0.0995
63121
ENSG00000236076
LINC01072
long intergenic non-protein coding RNA 1072
-2.3219
0.0071
63120
ENSG00000236049
LINC01920
long intergenic non-protein coding RNA 1920
-2.3219
1.0000
63119
ENSG00000235740
PHACTR2-AS1
PHACTR2 antisense RNA 1
-2.3219
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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