SHOGoiN Cell Methylome: GSM2773636

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773636


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M263Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274973 BSNDP2 barttin CLCNK type accessory beta subunit pseudogene 2 3.1699 0.0000
2 ENSG00000197713 RPE ribulose-5-phosphate-3-epimerase 3.1143 0.0000
3 ENSG00000224083 MTCO1P11 MT-CO1 pseudogene 11 3.0000 0.0000
4 ENSG00000228166 MTND1P11 MT-ND1 pseudogene 11 3.0000 0.0000
5 ENSG00000260088 novel transcript 3.0000 0.0000
6 ENSG00000271249 DIMT1P1 DIM1 dimethyladenosine transferase 1 homolog pseudogene 1 2.8074 0.0000
7 ENSG00000274755 NA 2.6958 0.0000
8 ENSG00000221783 MIR1183 microRNA 1183 2.6779 0.0000
9 ENSG00000228625 novel transcript 2.5850 0.0001
10 ENSG00000251888 RN7SKP190 RN7SK pseudogene 190 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000107187 LHX3 LIM homeobox 3 -2.4066 0.0000
63340 ENSG00000197921 HES5 hes family bHLH transcription factor 5 -2.4065 0.0000
63339 ENSG00000164619 BMPER BMP binding endothelial regulator -2.4063 0.0000
63338 ENSG00000253524 novel transcript -2.4057 0.0020
63337 ENSG00000124780 KCNK17 potassium two pore domain channel subfamily K member 17 -2.4054 0.0000
63336 ENSG00000078140 UBE2K ubiquitin conjugating enzyme E2 K -2.4050 0.0000
63335 ENSG00000121381 TAS2R9 taste 2 receptor member 9 -2.4037 0.0071
63334 ENSG00000119965 C10orf88 chromosome 10 open reading frame 88 -2.4022 0.0000
63333 ENSG00000207716 MIR572 microRNA 572 -2.4020 0.0008
63332 ENSG00000102678 FGF9 fibroblast growth factor 9 -2.4014 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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