Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773636

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773636


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M263Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274973 BSNDP2 BSND pseudogene 2 3.1699 0.0000
2 ENSG00000197713 RPE ribulose-5-phosphate-3-epimerase 3.1143 0.0000
3 ENSG00000224083 MTCO1P11 MT-CO1 pseudogene 11 3.0000 0.0000
4 ENSG00000228166 MTND1P11 MT-ND1 pseudogene 11 3.0000 0.0000
5 ENSG00000260088 DDX59-AS1 DDX59 antisense RNA 1 3.0000 0.0000
6 ENSG00000271249 DIMT1P1 DIM1 dimethyladenosine transferase 1 homolog pseudogene 1 2.8074 0.0000
7 ENSG00000274755 U2 spliceosomal RNA 2.6958 0.0000
8 ENSG00000221783 MIR1183 microRNA 1183 2.6779 0.0000
9 ENSG00000228625 novel transcript 2.5850 0.0001
10 ENSG00000251888 RN7SKP190 RN7SK pseudogene 190 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000241612 ribosomal protein L21 (RPL21) pseudogene -2.3219 1.0000
63127 ENSG00000240667 NBPF18P NBPF member 18, pseudogene -2.3219 0.3936
63126 ENSG00000237824 RPL23AP33 ribosomal protein L23a pseudogene 33 -2.3219 1.0000
63125 ENSG00000236822 NMBR-AS1 NMBR antisense RNA 1 -2.3219 0.1514
63124 ENSG00000236686 BZW1P1 basic leucine zipper and W2 domains 1 pseudogene 1 -2.3219 0.3936
63123 ENSG00000236493 EIF2S2P3 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 3 -2.3219 0.0995
63122 ENSG00000236179 PRAMEF35P PRAME family member 35, pseudogene -2.3219 0.0995
63121 ENSG00000236076 LINC01072 long intergenic non-protein coding RNA 1072 -2.3219 0.0071
63120 ENSG00000236049 LINC01920 long intergenic non-protein coding RNA 1920 -2.3219 1.0000
63119 ENSG00000235740 PHACTR2-AS1 PHACTR2 antisense RNA 1 -2.3219 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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