Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773636

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773636 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M263	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000274973	BSNDP2	BSND pseudogene 2	3.1699	0.0000
2	ENSG00000197713	RPE	ribulose-5-phosphate-3-epimerase	3.1143	0.0000
3	ENSG00000224083	MTCO1P11	MT-CO1 pseudogene 11	3.0000	0.0000
4	ENSG00000228166	MTND1P11	MT-ND1 pseudogene 11	3.0000	0.0000
5	ENSG00000260088	DDX59-AS1	DDX59 antisense RNA 1	3.0000	0.0000
6	ENSG00000271249	DIMT1P1	DIM1 dimethyladenosine transferase 1 homolog pseudogene 1	2.8074	0.0000
7	ENSG00000274755		U2 spliceosomal RNA	2.6958	0.0000
8	ENSG00000221783	MIR1183	microRNA 1183	2.6779	0.0000
9	ENSG00000228625		novel transcript	2.5850	0.0001
10	ENSG00000251888	RN7SKP190	RN7SK pseudogene 190	2.5850	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000241612		ribosomal protein L21 (RPL21) pseudogene	-2.3219	1.0000
63127	ENSG00000240667	NBPF18P	NBPF member 18, pseudogene	-2.3219	0.3936
63126	ENSG00000237824	RPL23AP33	ribosomal protein L23a pseudogene 33	-2.3219	1.0000
63125	ENSG00000236822	NMBR-AS1	NMBR antisense RNA 1	-2.3219	0.1514
63124	ENSG00000236686	BZW1P1	basic leucine zipper and W2 domains 1 pseudogene 1	-2.3219	0.3936
63123	ENSG00000236493	EIF2S2P3	eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 3	-2.3219	0.0995
63122	ENSG00000236179	PRAMEF35P	PRAME family member 35, pseudogene	-2.3219	0.0995
63121	ENSG00000236076	LINC01072	long intergenic non-protein coding RNA 1072	-2.3219	0.0071
63120	ENSG00000236049	LINC01920	long intergenic non-protein coding RNA 1920	-2.3219	1.0000
63119	ENSG00000235740	PHACTR2-AS1	PHACTR2 antisense RNA 1	-2.3219	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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