SHOGoiN Cell Methylome: GSM2773636
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773636 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M263 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000274973 | BSNDP2 | barttin CLCNK type accessory beta subunit pseudogene 2 | 3.1699 | 0.0000 |
| 2 | ENSG00000197713 | RPE | ribulose-5-phosphate-3-epimerase | 3.1143 | 0.0000 |
| 3 | ENSG00000224083 | MTCO1P11 | MT-CO1 pseudogene 11 | 3.0000 | 0.0000 |
| 4 | ENSG00000228166 | MTND1P11 | MT-ND1 pseudogene 11 | 3.0000 | 0.0000 |
| 5 | ENSG00000260088 | novel transcript | 3.0000 | 0.0000 | |
| 6 | ENSG00000271249 | DIMT1P1 | DIM1 dimethyladenosine transferase 1 homolog pseudogene 1 | 2.8074 | 0.0000 |
| 7 | ENSG00000274755 | NA | 2.6958 | 0.0000 | |
| 8 | ENSG00000221783 | MIR1183 | microRNA 1183 | 2.6779 | 0.0000 |
| 9 | ENSG00000228625 | novel transcript | 2.5850 | 0.0001 | |
| 10 | ENSG00000251888 | RN7SKP190 | RN7SK pseudogene 190 | 2.5850 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000107187 | LHX3 | LIM homeobox 3 | -2.4066 | 0.0000 |
| 63340 | ENSG00000197921 | HES5 | hes family bHLH transcription factor 5 | -2.4065 | 0.0000 |
| 63339 | ENSG00000164619 | BMPER | BMP binding endothelial regulator | -2.4063 | 0.0000 |
| 63338 | ENSG00000253524 | novel transcript | -2.4057 | 0.0020 | |
| 63337 | ENSG00000124780 | KCNK17 | potassium two pore domain channel subfamily K member 17 | -2.4054 | 0.0000 |
| 63336 | ENSG00000078140 | UBE2K | ubiquitin conjugating enzyme E2 K | -2.4050 | 0.0000 |
| 63335 | ENSG00000121381 | TAS2R9 | taste 2 receptor member 9 | -2.4037 | 0.0071 |
| 63334 | ENSG00000119965 | C10orf88 | chromosome 10 open reading frame 88 | -2.4022 | 0.0000 |
| 63333 | ENSG00000207716 | MIR572 | microRNA 572 | -2.4020 | 0.0008 |
| 63332 | ENSG00000102678 | FGF9 | fibroblast growth factor 9 | -2.4014 | 0.0000 |
