Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773637

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773637


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M264Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222357 RNU2-20P RNA, U2 small nuclear 20, pseudogene 3.0000 0.0000
2 ENSG00000218418 Rho GTPase activating protein 21 (ARHGAP21) pseudogene 2.8074 0.0000
3 ENSG00000229111 MED4-AS1 MED4 antisense RNA 1 2.8074 0.0000
4 ENSG00000229486 nuclear factor (eythroid-derived 2)-like 2 (NFE2L2) pseudogene 2.8074 0.0000
6 ENSG00000273609 leucine rich repeat containing 37B (LRRC37B) pseudogene 2.8074 0.0000
7 ENSG00000226366 CCDC12P1 CCDC12 pseudogene 1 2.6610 0.0000
8 ENSG00000201825 RNU6-1131P RNA, U6 small nuclear 1131, pseudogene 2.5850 0.0000
9 ENSG00000221456 MIR1202 microRNA 1202 2.5850 0.0000
10 ENSG00000223136 RN7SKP207 RN7SK pseudogene 207 2.5850 0.0000
63119 ENSG00000239697 TNFSF12 TNF superfamily member 12 -2.2552 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250515 rearranged L-myc fusion pseudogene -2.2591 0.0665
63127 ENSG00000222126 RNU2-9P RNA, U2 small nuclear 9, pseudogene -2.2591 0.0665
63126 ENSG00000250415 novel transcript -2.2581 0.0000
63125 ENSG00000257327 novel transcript -2.2581 0.0000
63124 ENSG00000269037 LINC01838 long intergenic non-protein coding RNA 1838 -2.2580 0.0000
63123 ENSG00000166681 BEX3 brain expressed X-linked 3 -2.2579 0.0000
63122 ENSG00000143224 PPOX protoporphyrinogen oxidase -2.2576 0.0000
63121 ENSG00000223960 CHROMR cholesterol induced regulator of metabolism RNA -2.2575 0.1571
63120 ENSG00000254485 novel transcript, antisense to THUMPD3 -2.2575 0.0024
63119 ENSG00000239697 TNFSF12 TNF superfamily member 12 -2.2552 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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