SHOGoiN Cell Methylome: GSM2773637

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773637


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M264Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222357 RNU2-20P RNA, U2 small nuclear 20, pseudogene 3.0000 0.0000
2 ENSG00000218418 Rho GTPase activating protein 21 (ARHGAP21) pseudogene 2.8074 0.0000
3 ENSG00000229111 MED4-AS1 MED4 antisense RNA 1 2.8074 0.0000
4 ENSG00000229486 nuclear factor (eythroid-derived 2)-like 2 (NFE2L2) pseudogene 2.8074 0.0000
5 ENSG00000230177 novel transcript 2.8074 0.0000
6 ENSG00000273609 leucine rich repeat containing 37B (LRRC37B) pseudogene 2.8074 0.0000
7 ENSG00000226366 coiled-coil domain containing 12 (CCDC12) pseudogene 2.6610 0.0000
8 ENSG00000201825 RNU6-1131P RNA, U6 small nuclear 1131, pseudogene 2.5850 0.0000
9 ENSG00000221456 MIR1202 microRNA 1202 2.5850 0.0000
10 ENSG00000223136 RN7SKP207 RN7SK pseudogene 207 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000277367 NIMA-related kinase 2 (NEK2) pseudogene -2.3219 0.1034
63340 ENSG00000274663 RNA5SP526 RNA, 5S ribosomal pseudogene 526 -2.3219 1.0000
63339 ENSG00000273762 VN1R76P vomeronasal 1 receptor 76 pseudogene -2.3219 0.6088
63338 ENSG00000271136 Opa interacting protein 5 (OIP5) pseudogene -2.3219 0.0035
63337 ENSG00000271078 NEDD4 binding protein 2 (N4BP2) pseudogene -2.3219 1.0000
63336 ENSG00000266919 hsa-mir-423 -2.3219 0.0120
63335 ENSG00000265394 novel transcript, antisense to EFCAB5 -2.3219 0.0120
63334 ENSG00000264897 MIR3921 microRNA 3921 -2.3219 0.6088
63333 ENSG00000264300 bromodomain PHD finger transcription factor (BPTF) pseudogene -2.3219 0.3828
63332 ENSG00000263735 MIR4662B microRNA 4662b -2.3219 0.6088

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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