Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773638

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773638 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M265	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000274128		novel transcript, sense intronic to ADAMTSL3	3.4594	0.0000
2	ENSG00000235378	MRPS10P1	mitochondrial ribosomal protein S10 pseudogene 1	3.0000	0.0000
3	ENSG00000271156		novel transcript	2.8074	0.0000
4	ENSG00000127364	TAS2R4	taste 2 receptor member 4	2.5850	0.0000
5	ENSG00000216740	ANXA2P3	annexin A2 pseudogene 3	2.5850	0.0000
6	ENSG00000248984		novel transcript	2.5850	0.0000
7	ENSG00000250082		DENN/MADD domain containing 3 (DENND3) pseudogene	2.5850	0.0000
8	ENSG00000258387		Rho GTPase activating protein 17 (ARHGAP17) pseudogene	2.5850	0.0000
9	ENSG00000258556	LINC02322	long intergenic non-protein coding RNA 2322	2.5850	0.0000
10	ENSG00000258894	ARHGAP16P	Rho GTPase activating protein 16 pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000283246	MEP1AP1	meprin A subunit alpha pseudogene 1	-2.1590	0.0081
63127	ENSG00000268673		novel transcript	-2.1587	0.0003
63126	ENSG00000244230	RN7SL151P	RNA, 7SL, cytoplasmic 151, pseudogene	-2.1586	0.0000
63125	ENSG00000206787	RNU6-76P	RNA, U6 small nuclear 76, pseudogene	-2.1584	0.0000
63124	ENSG00000178149	DALRD3	DALR anticodon binding domain containing 3	-2.1582	0.0000
63123	ENSG00000084092	NOA1	nitric oxide associated 1	-2.1582	0.0000
63122	ENSG00000255335	LINC02729	long intergenic non-protein coding RNA 2729	-2.1579	0.0000
63121	ENSG00000156413	FUT6	fucosyltransferase 6	-2.1572	0.0000
63120	ENSG00000265304	MIR3650	microRNA 3650	-2.1557	0.0000
63119	ENSG00000244968	LIFR-AS1	LIFR antisense RNA 1	-2.1557	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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