Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773638
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773638
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M265
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000274128
novel transcript, sense intronic to ADAMTSL3
3.4594
0.0000
2
ENSG00000235378
MRPS10P1
mitochondrial ribosomal protein S10 pseudogene 1
3.0000
0.0000
3
ENSG00000271156
novel transcript
2.8074
0.0000
4
ENSG00000127364
TAS2R4
taste 2 receptor member 4
2.5850
0.0000
5
ENSG00000216740
ANXA2P3
annexin A2 pseudogene 3
2.5850
0.0000
6
ENSG00000248984
novel transcript
2.5850
0.0000
7
ENSG00000250082
DENN/MADD domain containing 3 (DENND3) pseudogene
2.5850
0.0000
8
ENSG00000258387
Rho GTPase activating protein 17 (ARHGAP17) pseudogene
2.5850
0.0000
9
ENSG00000258556
LINC02322
long intergenic non-protein coding RNA 2322
2.5850
0.0000
10
ENSG00000258894
ARHGAP16P
Rho GTPase activating protein 16 pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000283246
MEP1AP1
meprin A subunit alpha pseudogene 1
-2.1590
0.0081
63127
ENSG00000268673
novel transcript
-2.1587
0.0003
63126
ENSG00000244230
RN7SL151P
RNA, 7SL, cytoplasmic 151, pseudogene
-2.1586
0.0000
63125
ENSG00000206787
RNU6-76P
RNA, U6 small nuclear 76, pseudogene
-2.1584
0.0000
63124
ENSG00000178149
DALRD3
DALR anticodon binding domain containing 3
-2.1582
0.0000
63123
ENSG00000084092
NOA1
nitric oxide associated 1
-2.1582
0.0000
63122
ENSG00000255335
LINC02729
long intergenic non-protein coding RNA 2729
-2.1579
0.0000
63121
ENSG00000156413
FUT6
fucosyltransferase 6
-2.1572
0.0000
63120
ENSG00000265304
MIR3650
microRNA 3650
-2.1557
0.0000
63119
ENSG00000244968
LIFR-AS1
LIFR antisense RNA 1
-2.1557
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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