SHOGoiN Cell Methylome: GSM2773638
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773638 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M265 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000274128 | novel transcript, sense intronic to ADAMTSL3 | 3.4594 | 0.0000 | |
| 2 | ENSG00000235378 | MRPS10P1 | mitochondrial ribosomal protein S10 pseudogene 1 | 3.0000 | 0.0000 |
| 3 | ENSG00000271156 | novel transcript | 2.8074 | 0.0000 | |
| 4 | ENSG00000127364 | TAS2R4 | taste 2 receptor member 4 | 2.5850 | 0.0000 |
| 5 | ENSG00000216740 | ANXA2P3 | annexin A2 pseudogene 3 | 2.5850 | 0.0000 |
| 6 | ENSG00000248984 | novel transcript | 2.5850 | 0.0000 | |
| 7 | ENSG00000250082 | DENN/MADD domain containing 3 (DENND3) pseudogene | 2.5850 | 0.0000 | |
| 8 | ENSG00000258387 | Rho GTPase activating protein 17 (ARHGAP17) pseudogene | 2.5850 | 0.0000 | |
| 9 | ENSG00000258556 | LINC02322 | long intergenic non-protein coding RNA 2322 | 2.5850 | 0.0000 |
| 10 | ENSG00000258894 | Rho GTPase activating protein 17 (ARHGAP17) pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000271064 | coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene | -2.2531 | 0.0000 | |
| 63340 | ENSG00000260398 | novel transcript, overlapping to PKIA | -2.2516 | 0.3844 | |
| 63339 | ENSG00000250045 | CBX3P3 | chromobox 3 pseudogene 3 | -2.2516 | 0.1027 |
| 63338 | ENSG00000212370 | RNU6-482P | RNA, U6 small nuclear 482, pseudogene | -2.2516 | 0.1027 |
| 63337 | ENSG00000156206 | CFAP161 | cilia and flagella associated protein 161 | -2.2515 | 0.0000 |
| 63336 | ENSG00000270021 | novel transcript, antisense to H2AFY | -2.2511 | 0.0000 | |
| 63335 | ENSG00000278022 | novel transcript, sense intronic to IGF1R | -2.2505 | 0.0000 | |
| 63334 | ENSG00000255111 | Ankyrin repeat domain-containing protein 33 (ANKRD33B) pseudogene | -2.2502 | 0.0000 | |
| 63333 | ENSG00000252714 | RNA5SP392 | RNA, 5S ribosomal pseudogene 392 | -2.2489 | 0.0000 |
| 63332 | ENSG00000136352 | NKX2-1 | NK2 homeobox 1 | -2.2484 | 0.0000 |
