Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773638

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773638


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M265Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274128 novel transcript, sense intronic to ADAMTSL3 3.4594 0.0000
2 ENSG00000235378 MRPS10P1 mitochondrial ribosomal protein S10 pseudogene 1 3.0000 0.0000
3 ENSG00000271156 novel transcript 2.8074 0.0000
4 ENSG00000127364 TAS2R4 taste 2 receptor member 4 2.5850 0.0000
5 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 2.5850 0.0000
6 ENSG00000248984 novel transcript 2.5850 0.0000
7 ENSG00000250082 DENN/MADD domain containing 3 (DENND3) pseudogene 2.5850 0.0000
8 ENSG00000258387 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.5850 0.0000
9 ENSG00000258556 LINC02322 long intergenic non-protein coding RNA 2322 2.5850 0.0000
10 ENSG00000258894 ARHGAP16P Rho GTPase activating protein 16 pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000283246 MEP1AP1 meprin A subunit alpha pseudogene 1 -2.1590 0.0081
63127 ENSG00000268673 novel transcript -2.1587 0.0003
63126 ENSG00000244230 RN7SL151P RNA, 7SL, cytoplasmic 151, pseudogene -2.1586 0.0000
63125 ENSG00000206787 RNU6-76P RNA, U6 small nuclear 76, pseudogene -2.1584 0.0000
63124 ENSG00000178149 DALRD3 DALR anticodon binding domain containing 3 -2.1582 0.0000
63123 ENSG00000084092 NOA1 nitric oxide associated 1 -2.1582 0.0000
63122 ENSG00000255335 LINC02729 long intergenic non-protein coding RNA 2729 -2.1579 0.0000
63121 ENSG00000156413 FUT6 fucosyltransferase 6 -2.1572 0.0000
63120 ENSG00000265304 MIR3650 microRNA 3650 -2.1557 0.0000
63119 ENSG00000244968 LIFR-AS1 LIFR antisense RNA 1 -2.1557 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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