SHOGoiN Cell Methylome: GSM2773638

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773638


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M265Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274128 novel transcript, sense intronic to ADAMTSL3 3.4594 0.0000
2 ENSG00000235378 MRPS10P1 mitochondrial ribosomal protein S10 pseudogene 1 3.0000 0.0000
3 ENSG00000271156 novel transcript 2.8074 0.0000
4 ENSG00000127364 TAS2R4 taste 2 receptor member 4 2.5850 0.0000
5 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 2.5850 0.0000
6 ENSG00000248984 novel transcript 2.5850 0.0000
7 ENSG00000250082 DENN/MADD domain containing 3 (DENND3) pseudogene 2.5850 0.0000
8 ENSG00000258387 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.5850 0.0000
9 ENSG00000258556 LINC02322 long intergenic non-protein coding RNA 2322 2.5850 0.0000
10 ENSG00000258894 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271064 coiled-coil-helix-coiled-coil-helix domain containing 2, pseudogene -2.2531 0.0000
63340 ENSG00000260398 novel transcript, overlapping to PKIA -2.2516 0.3844
63339 ENSG00000250045 CBX3P3 chromobox 3 pseudogene 3 -2.2516 0.1027
63338 ENSG00000212370 RNU6-482P RNA, U6 small nuclear 482, pseudogene -2.2516 0.1027
63337 ENSG00000156206 CFAP161 cilia and flagella associated protein 161 -2.2515 0.0000
63336 ENSG00000270021 novel transcript, antisense to H2AFY -2.2511 0.0000
63335 ENSG00000278022 novel transcript, sense intronic to IGF1R -2.2505 0.0000
63334 ENSG00000255111 Ankyrin repeat domain-containing protein 33 (ANKRD33B) pseudogene -2.2502 0.0000
63333 ENSG00000252714 RNA5SP392 RNA, 5S ribosomal pseudogene 392 -2.2489 0.0000
63332 ENSG00000136352 NKX2-1 NK2 homeobox 1 -2.2484 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...