Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773639

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773639 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M266	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000223409	RPL17P17	ribosomal protein L17 pseudogene 17	2.8074	0.0000
2	ENSG00000256981		taste receptor, type 2, member 18 pseudogene	2.8074	0.0000
3	ENSG00000217624	YWHAZP10	YWHAZ pseudogene 10	2.5850	0.0000
4	ENSG00000229221	HNRNPA1P66	heterogeneous nuclear ribonucleoprotein A1 pseudogene 66	2.5850	0.0000
5	ENSG00000279780		novel transcript	2.5850	0.0000
6	ENSG00000231519		novel transcript	2.4534	0.0000
7	ENSG00000274640	SNORD109A	small nucleolar RNA, C/D box 109A	2.4466	0.0000
8	ENSG00000234767	LINC01052	long intergenic non-protein coding RNA 1052	2.3219	0.0002
9	ENSG00000260686		novel transcript, overlapping SNX2	2.3219	0.0000
10	ENSG00000267112		novel transcript, antisense to RAB27B	2.3219	0.0002

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000233472		novel transcript	-2.1910	0.0000
63127	ENSG00000243250	RPS6P16	ribosomal protein S6 pseudogene 16	-2.1905	0.0000
63126	ENSG00000228004	MYCLP2	MYCL pseudogene 2	-2.1902	0.0000
63125	ENSG00000262962	KARS1P3	lysyl-tRNA synthetase 1 pseudogene 3	-2.1902	0.0000
63124	ENSG00000237412	PRSS56	serine protease 56	-2.1901	0.0000
63123	ENSG00000176383	B3GNT4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	-2.1899	0.0000
63122	ENSG00000179292	TMEM151A	transmembrane protein 151A	-2.1899	0.0000
63121	ENSG00000013293	SLC7A14	solute carrier family 7 member 14	-2.1895	0.0000
63120	ENSG00000225836		novel transcript	-2.1892	0.0000
63119	ENSG00000157833	GAREM2	GRB2 associated regulator of MAPK1 subtype 2	-2.1891	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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