Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773639

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773639


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M266Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223409 RPL17P17 ribosomal protein L17 pseudogene 17 2.8074 0.0000
2 ENSG00000256981 taste receptor, type 2, member 18 pseudogene 2.8074 0.0000
3 ENSG00000217624 YWHAZP10 YWHAZ pseudogene 10 2.5850 0.0000
4 ENSG00000229221 HNRNPA1P66 heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 2.5850 0.0000
5 ENSG00000279780 novel transcript 2.5850 0.0000
6 ENSG00000231519 novel transcript 2.4534 0.0000
7 ENSG00000274640 SNORD109A small nucleolar RNA, C/D box 109A 2.4466 0.0000
8 ENSG00000234767 LINC01052 long intergenic non-protein coding RNA 1052 2.3219 0.0002
9 ENSG00000260686 novel transcript, overlapping SNX2 2.3219 0.0000
10 ENSG00000267112 novel transcript, antisense to RAB27B 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000233472 novel transcript -2.1910 0.0000
63127 ENSG00000243250 RPS6P16 ribosomal protein S6 pseudogene 16 -2.1905 0.0000
63126 ENSG00000228004 MYCLP2 MYCL pseudogene 2 -2.1902 0.0000
63125 ENSG00000262962 KARS1P3 lysyl-tRNA synthetase 1 pseudogene 3 -2.1902 0.0000
63124 ENSG00000237412 PRSS56 serine protease 56 -2.1901 0.0000
63123 ENSG00000176383 B3GNT4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 -2.1899 0.0000
63122 ENSG00000179292 TMEM151A transmembrane protein 151A -2.1899 0.0000
63121 ENSG00000013293 SLC7A14 solute carrier family 7 member 14 -2.1895 0.0000
63120 ENSG00000225836 novel transcript -2.1892 0.0000
63119 ENSG00000157833 GAREM2 GRB2 associated regulator of MAPK1 subtype 2 -2.1891 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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