SHOGoiN Cell Methylome: GSM2773639
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773639 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M266 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000223409 | RPL17P17 | ribosomal protein L17 pseudogene 17 | 2.8074 | 0.0000 |
| 2 | ENSG00000256981 | taste receptor, type 2, member 18 pseudogene | 2.8074 | 0.0000 | |
| 3 | ENSG00000217624 | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ) pseudogene | 2.5850 | 0.0000 | |
| 4 | ENSG00000229221 | HNRNPA1P66 | heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 | 2.5850 | 0.0000 |
| 5 | ENSG00000279780 | novel transcript | 2.5850 | 0.0000 | |
| 6 | ENSG00000231519 | novel transcript | 2.4534 | 0.0000 | |
| 7 | ENSG00000274640 | SNORD109A | small nucleolar RNA, C/D box 109A | 2.4466 | 0.0000 |
| 8 | ENSG00000234767 | LINC01052 | long intergenic non-protein coding RNA 1052 | 2.3219 | 0.0002 |
| 9 | ENSG00000260686 | novel transcript, overlapping SNX2 | 2.3219 | 0.0000 | |
| 10 | ENSG00000267112 | novel transcript, antisense to RAB27B | 2.3219 | 0.0002 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000261678 | SCRT1 | scratch family transcriptional repressor 1 | -2.2630 | 0.0000 |
| 63340 | ENSG00000184523 | PTGER4P2 | prostaglandin E receptor 4 pseudogene 2 | -2.2630 | 0.0000 |
| 63339 | ENSG00000104369 | JPH1 | junctophilin 1 | -2.2623 | 0.0000 |
| 63338 | ENSG00000186967 | KRTAP19-4 | keratin associated protein 19-4 | -2.2623 | 0.0004 |
| 63337 | ENSG00000273012 | novel transcript | -2.2619 | 0.0000 | |
| 63336 | ENSG00000226209 | RBISP1 | RBIS pseudogene 1 | -2.2618 | 0.0000 |
| 63335 | ENSG00000181555 | SETD2 | SET domain containing 2, histone lysine methyltransferase | -2.2615 | 0.0000 |
| 63334 | ENSG00000240089 | BMS1P3 | BMS1 pseudogene 3 | -2.2606 | 0.0000 |
| 63333 | ENSG00000151303 | novel transcript | -2.2606 | 0.0000 | |
| 63332 | ENSG00000235608 | NKX1-1 | NK1 homeobox 1 | -2.2599 | 0.0000 |
