SHOGoiN Cell Methylome: GSM2773639

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773639


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M266Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223409 RPL17P17 ribosomal protein L17 pseudogene 17 2.8074 0.0000
2 ENSG00000256981 taste receptor, type 2, member 18 pseudogene 2.8074 0.0000
3 ENSG00000217624 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide (YWHAZ) pseudogene 2.5850 0.0000
4 ENSG00000229221 HNRNPA1P66 heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 2.5850 0.0000
5 ENSG00000279780 novel transcript 2.5850 0.0000
6 ENSG00000231519 novel transcript 2.4534 0.0000
7 ENSG00000274640 SNORD109A small nucleolar RNA, C/D box 109A 2.4466 0.0000
8 ENSG00000234767 LINC01052 long intergenic non-protein coding RNA 1052 2.3219 0.0002
9 ENSG00000260686 novel transcript, overlapping SNX2 2.3219 0.0000
10 ENSG00000267112 novel transcript, antisense to RAB27B 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000261678 SCRT1 scratch family transcriptional repressor 1 -2.2630 0.0000
63340 ENSG00000184523 PTGER4P2 prostaglandin E receptor 4 pseudogene 2 -2.2630 0.0000
63339 ENSG00000104369 JPH1 junctophilin 1 -2.2623 0.0000
63338 ENSG00000186967 KRTAP19-4 keratin associated protein 19-4 -2.2623 0.0004
63337 ENSG00000273012 novel transcript -2.2619 0.0000
63336 ENSG00000226209 RBISP1 RBIS pseudogene 1 -2.2618 0.0000
63335 ENSG00000181555 SETD2 SET domain containing 2, histone lysine methyltransferase -2.2615 0.0000
63334 ENSG00000240089 BMS1P3 BMS1 pseudogene 3 -2.2606 0.0000
63333 ENSG00000151303 novel transcript -2.2606 0.0000
63332 ENSG00000235608 NKX1-1 NK1 homeobox 1 -2.2599 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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