Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773639
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773639
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M266
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000223409
RPL17P17
ribosomal protein L17 pseudogene 17
2.8074
0.0000
2
ENSG00000256981
taste receptor, type 2, member 18 pseudogene
2.8074
0.0000
3
ENSG00000217624
YWHAZP10
YWHAZ pseudogene 10
2.5850
0.0000
4
ENSG00000229221
HNRNPA1P66
heterogeneous nuclear ribonucleoprotein A1 pseudogene 66
2.5850
0.0000
5
ENSG00000279780
novel transcript
2.5850
0.0000
6
ENSG00000231519
novel transcript
2.4534
0.0000
7
ENSG00000274640
SNORD109A
small nucleolar RNA, C/D box 109A
2.4466
0.0000
8
ENSG00000234767
LINC01052
long intergenic non-protein coding RNA 1052
2.3219
0.0002
9
ENSG00000260686
novel transcript, overlapping SNX2
2.3219
0.0000
10
ENSG00000267112
novel transcript, antisense to RAB27B
2.3219
0.0002
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000233472
novel transcript
-2.1910
0.0000
63127
ENSG00000243250
RPS6P16
ribosomal protein S6 pseudogene 16
-2.1905
0.0000
63126
ENSG00000228004
MYCLP2
MYCL pseudogene 2
-2.1902
0.0000
63125
ENSG00000262962
KARS1P3
lysyl-tRNA synthetase 1 pseudogene 3
-2.1902
0.0000
63124
ENSG00000237412
PRSS56
serine protease 56
-2.1901
0.0000
63123
ENSG00000176383
B3GNT4
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
-2.1899
0.0000
63122
ENSG00000179292
TMEM151A
transmembrane protein 151A
-2.1899
0.0000
63121
ENSG00000013293
SLC7A14
solute carrier family 7 member 14
-2.1895
0.0000
63120
ENSG00000225836
novel transcript
-2.1892
0.0000
63119
ENSG00000157833
GAREM2
GRB2 associated regulator of MAPK1 subtype 2
-2.1891
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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