Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773640

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773640


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M267Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263514 MIR3668 microRNA 3668 2.5850 0.0000
2 ENSG00000280881 novel transcript 2.5850 0.0000
3 ENSG00000200683 RNU6-379P RNA, U6 small nuclear 379, pseudogene 2.3219 0.0000
4 ENSG00000203506 RBMS3-AS2 RBMS3 antisense RNA 2 2.3219 0.0001
5 ENSG00000228777 LINC02534 long intergenic non-protein coding RNA 2534 2.3219 0.0001
6 ENSG00000240241 novel transcript 2.3219 0.0001
8 ENSG00000261807 LINC02141 long intergenic non-protein coding RNA 2141 2.3219 0.0001
9 ENSG00000265735 RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene 2.3219 0.0001
10 ENSG00000269986 novel transcript 2.3219 0.0001
63119 ENSG00000276302 novel protein -2.1060 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000177943 MAMDC4 MAM domain containing 4 -2.1083 0.0000
63127 ENSG00000173085 COQ2 coenzyme Q2, polyprenyltransferase -2.1082 0.0000
63126 ENSG00000253833 DSTNP3 DSTN pseudogene 3 -2.1079 0.0000
63125 ENSG00000279168 novel transcript, sense overlapping POLR2J2, UPK3BL and RASA4 -2.1078 0.0000
63124 ENSG00000257012 lysine (K)-specific demethylase 4D (KDM4D) pseudogene -2.1077 0.0000
63123 ENSG00000163254 CRYGC crystallin gamma C -2.1074 0.0000
63122 ENSG00000233499 OR5B1P olfactory receptor family 5 subfamily B member 1 pseudogene -2.1073 0.6129
63121 ENSG00000261447 novel transcript -2.1061 0.0000
63120 ENSG00000179002 TAS1R2 taste 1 receptor member 2 -2.1060 0.0000
63119 ENSG00000276302 novel protein -2.1060 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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