SHOGoiN Cell Methylome: GSM2773640

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773640


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M267Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263514 MIR3668 microRNA 3668 2.5850 0.0000
2 ENSG00000280881 novel transcript 2.5850 0.0000
3 ENSG00000200683 RNU6-379P RNA, U6 small nuclear 379, pseudogene 2.3219 0.0000
4 ENSG00000203506 RBMS3-AS2 RBMS3 antisense RNA 2 2.3219 0.0001
5 ENSG00000228777 LINC02534 long intergenic non-protein coding RNA 2534 2.3219 0.0001
6 ENSG00000240241 novel transcript 2.3219 0.0001
8 ENSG00000261807 LINC02141 long intergenic non-protein coding RNA 2141 2.3219 0.0001
9 ENSG00000265735 RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene 2.3219 0.0001
10 ENSG00000269986 novel transcript 2.3219 0.0001
63332 ENSG00000242791 novel transcript -2.1699 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000120063 GNA13 G protein subunit alpha 13 -2.1730 0.0000
63340 ENSG00000155111 CDK19 cyclin dependent kinase 19 -2.1729 0.0000
63339 ENSG00000200164 NA -2.1726 0.0000
63338 ENSG00000091527 CDV3 CDV3 homolog -2.1724 0.0000
63337 ENSG00000253603 CERNA3 competing endogenous lncRNA 3 for miR-645 -2.1721 0.0324
63336 ENSG00000008988 RPS20 ribosomal protein S20 -2.1721 0.0324
63335 ENSG00000224861 YBX1P1 Y-box binding protein 1 pseudogene 1 -2.1719 0.0000
63334 ENSG00000272321 novel transcript, antisense to STK3 -2.1715 0.0000
63333 ENSG00000262352 LINC02564 long intergenic non-protein coding RNA 2564 -2.1704 0.0000
63332 ENSG00000242791 novel transcript -2.1699 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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