Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773641

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773641


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M268Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224437 PIGUP1 phosphatidylinositol glycan anchor biosynthesis class U pseudogene 1 2.5850 0.0000
2 ENSG00000252263 RNU6-659P RNA, U6 small nuclear 659, pseudogene 2.5850 0.0000
3 ENSG00000266110 MIR4423 microRNA 4423 2.5850 0.0000
4 ENSG00000223087 RNU6-602P RNA, U6 small nuclear 602, pseudogene 2.4534 0.0000
5 ENSG00000226066 ZP3P2 ZP3 pseudogene 2 2.3219 0.0003
6 ENSG00000229910 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 2.3219 0.0003
7 ENSG00000242602 RPL35AP13 ribosomal protein L35a pseudogene 13 2.3219 0.0000
8 ENSG00000248769 POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene 2.3219 0.0000
9 ENSG00000258162 novel transcript, antisense to PPFIA2 2.3219 0.0003
10 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000239989 immunoglobulin superfamily, member 3 (IGSF3) pseudogene -2.0512 0.0000
63127 ENSG00000257086 novel transcript -2.0502 0.0000
63126 ENSG00000273958 novel transcript -2.0498 0.0000
63125 ENSG00000237810 polo-like kinase 1 (Drosophila) (PLK1) pseudogene -2.0493 0.0383
63124 ENSG00000257663 novel transcript, antisense to C12orf44 -2.0493 0.0000
63123 ENSG00000269044 novel transcript, sense intronic C19orf42 -2.0488 0.0000
63122 ENSG00000244953 novel transcript -2.0485 0.0000
63121 ENSG00000212464 SNORA12 small nucleolar RNA, H/ACA box 12 -2.0484 0.0000
63119 ENSG00000172201 ID4 inhibitor of DNA binding 4, HLH protein -2.0482 0.0000
10 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.3219 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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