SHOGoiN Cell Methylome: GSM2773641

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773641


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M268Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224437 PIGUP1 phosphatidylinositol glycan anchor biosynthesis class U pseudogene 1 2.5850 0.0000
2 ENSG00000252263 RNU6-659P RNA, U6 small nuclear 659, pseudogene 2.5850 0.0000
3 ENSG00000266110 MIR4423 microRNA 4423 2.5850 0.0000
4 ENSG00000223087 RNU6-602P RNA, U6 small nuclear 602, pseudogene 2.4534 0.0000
5 ENSG00000226066 zona pellucida glycoprotein 3 (sperm receptor) (ZP3) pseudogene 2.3219 0.0003
6 ENSG00000229910 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 2.3219 0.0003
7 ENSG00000242602 ribosomal protein L35a (RPL35A) pseudogene 2.3219 0.0000
8 ENSG00000248769 POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene 2.3219 0.0000
9 ENSG00000258162 novel transcript, antisense to PPFIA2 2.3219 0.0003
10 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000228452 novel transcript -2.1126 0.0000
63340 ENSG00000132141 CCT6B chaperonin containing TCP1 subunit 6B -2.1109 0.0000
63339 ENSG00000224661 novel transcript -2.1107 0.0000
63338 ENSG00000116750 UCHL5 ubiquitin C-terminal hydrolase L5 -2.1107 0.0000
63337 ENSG00000181444 ZNF467 zinc finger protein 467 -2.1106 0.0000
63336 ENSG00000213911 OR2G1P olfactory receptor family 2 subfamily G member 1 pseudogene -2.1103 0.0050
63335 ENSG00000182223 ZAR1 zygote arrest 1 -2.1101 0.0000
63334 ENSG00000264577 novel transcript, antisense to RPL23A -2.1088 0.0000
63333 ENSG00000166681 BEX3 brain expressed X-linked 3 -2.1087 0.0000
63332 ENSG00000224424 PRKAR2A-AS1 PRKAR2A antisense RNA 1 -2.1084 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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