Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773642

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773642


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M269Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235637 novel transcript 3.0271 0.0000
2 ENSG00000207871 MIR513B microRNA 513b 3.0247 0.0000
3 ENSG00000254163 novel transcript 3.0000 0.0000
4 ENSG00000253412 IGHVIII-13-1 immunoglobulin heavy variable (III)-13-1 (pseudogene) 2.8074 0.0000
5 ENSG00000253709 IGHV1-14 immunoglobulin heavy variable 1-14 (pseudogene) 2.8074 0.0000
6 ENSG00000203737 GPR52 G protein-coupled receptor 52 2.6462 0.0000
7 ENSG00000231292 IGKV1OR2-108 immunoglobulin kappa variable 1/OR2-108 (non-functional) 2.6055 0.0000
8 ENSG00000112214 FHL5 four and a half LIM domains 5 2.5850 0.0001
9 ENSG00000197550 zinc finger pseudogene 2.5850 0.0001
10 ENSG00000199886 RNU6-249P RNA, U6 small nuclear 249, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000176912 TYMSOS TYMS opposite strand -2.2923 0.0000
63220 ENSG00000277758 synaptotagmin-15 -2.2923 0.0000
63219 ENSG00000176510 OR10AC1 olfactory receptor family 10 subfamily AC member 1 (gene/pseudogene) -2.2921 0.0000
63218 ENSG00000185963 BICD2 BICD cargo adaptor 2 -2.2918 0.0000
63217 ENSG00000273139 novel transcript -2.2912 0.0000
63216 ENSG00000262352 LINC02564 long intergenic non-protein coding RNA 2564 -2.2908 0.0000
63215 ENSG00000010270 STARD3NL STARD3 N-terminal like -2.2905 0.0000
63214 ENSG00000187664 HAPLN4 hyaluronan and proteoglycan link protein 4 -2.2902 0.0000
63213 ENSG00000188859 FAM78B family with sequence similarity 78 member B -2.2895 0.0000
63212 ENSG00000244242 IFITM10 interferon induced transmembrane protein 10 -2.2893 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...