Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773642
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773642
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M269
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000235637
novel transcript
3.0271
0.0000
2
ENSG00000207871
MIR513B
microRNA 513b
3.0247
0.0000
3
ENSG00000254163
novel transcript
3.0000
0.0000
4
ENSG00000253412
IGHVIII-13-1
immunoglobulin heavy variable (III)-13-1 (pseudogene)
2.8074
0.0000
5
ENSG00000253709
IGHV1-14
immunoglobulin heavy variable 1-14 (pseudogene)
2.8074
0.0000
6
ENSG00000203737
GPR52
G protein-coupled receptor 52
2.6462
0.0000
7
ENSG00000231292
IGKV1OR2-108
immunoglobulin kappa variable 1/OR2-108 (non-functional)
2.6055
0.0000
8
ENSG00000112214
FHL5
four and a half LIM domains 5
2.5850
0.0001
9
ENSG00000197550
zinc finger pseudogene
2.5850
0.0001
10
ENSG00000199886
RNU6-249P
RNA, U6 small nuclear 249, pseudogene
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000112110
MRPL18
mitochondrial ribosomal protein L18
-2.2693
0.0000
63172
ENSG00000211813
TRAV34
T cell receptor alpha variable 34
-2.2691
0.1474
63171
ENSG00000206716
RNU6-133P
RNA, U6 small nuclear 133, pseudogene
-2.2691
0.2341
63170
ENSG00000254574
novel transcript
-2.2690
0.0000
63169
ENSG00000272720
novel transcript, antisense to BAIAP2L2
-2.2686
0.0000
63168
ENSG00000163424
TEX55
testis expressed 55
-2.2680
0.0000
63167
ENSG00000229289
novel transcript
-2.2680
0.0630
63166
ENSG00000227489
novel transcript
-2.2680
0.0630
63165
ENSG00000256797
KLRF2
killer cell lectin like receptor F2
-2.2677
0.0000
63164
ENSG00000141582
CBX4
chromobox 4
-2.2675
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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