SHOGoiN Cell Methylome: GSM2773642
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773642 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M269 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000235637 | novel transcript | 3.0271 | 0.0000 | |
| 2 | ENSG00000207871 | MIR513B | microRNA 513b | 3.0247 | 0.0000 |
| 3 | ENSG00000254163 | novel transcript | 3.0000 | 0.0000 | |
| 4 | ENSG00000253412 | IGHVIII-13-1 | immunoglobulin heavy variable (III)-13-1 (pseudogene) | 2.8074 | 0.0000 |
| 5 | ENSG00000253709 | IGHV1-14 | immunoglobulin heavy variable 1-14 (pseudogene) | 2.8074 | 0.0000 |
| 6 | ENSG00000203737 | GPR52 | G protein-coupled receptor 52 | 2.6462 | 0.0000 |
| 7 | ENSG00000231292 | IGKV1OR2-108 | immunoglobulin kappa variable 1/OR2-108 (non-functional) | 2.6055 | 0.0000 |
| 8 | ENSG00000112214 | FHL5 | four and a half LIM domains 5 | 2.5850 | 0.0001 |
| 9 | ENSG00000197550 | zinc finger pseudogene | 2.5850 | 0.0001 | |
| 10 | ENSG00000199886 | RNU6-249P | RNA, U6 small nuclear 249, pseudogene | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000260253 | novel transcript, overlapping to DUSP4 | -2.3227 | 0.0000 | |
| 63340 | ENSG00000235354 | RPS29P16 | ribosomal protein S29 pseudogene 16 | -2.3220 | 0.0000 |
| 63338 | ENSG00000280432 | TEC | -2.3219 | 1.0000 | |
| 63337 | ENSG00000275226 | LINC00547 | long intergenic non-protein coding RNA 547 | -2.3219 | 1.0000 |
| 63336 | ENSG00000274663 | RNA5SP526 | RNA, 5S ribosomal pseudogene 526 | -2.3219 | 0.6187 |
| 63335 | ENSG00000273550 | novel transcript | -2.3219 | 0.0043 | |
| 63334 | ENSG00000272123 | novel transcript, antisense to ITGA2 | -2.3219 | 1.0000 | |
| 63333 | ENSG00000271439 | HIG1 hypoxia inducible domain family, member 1C (HIGD1C) pseudogene | -2.3219 | 1.0000 | |
| 10 | ENSG00000199886 | RNU6-249P | RNA, U6 small nuclear 249, pseudogene | 2.5850 | 0.0000 |
| 9 | ENSG00000197550 | zinc finger pseudogene | 2.5850 | 0.0001 |
