Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773642

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773642 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M269	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000235637		novel transcript	3.0271	0.0000
2	ENSG00000207871	MIR513B	microRNA 513b	3.0247	0.0000
3	ENSG00000254163		novel transcript	3.0000	0.0000
4	ENSG00000253412	IGHVIII-13-1	immunoglobulin heavy variable (III)-13-1 (pseudogene)	2.8074	0.0000
5	ENSG00000253709	IGHV1-14	immunoglobulin heavy variable 1-14 (pseudogene)	2.8074	0.0000
6	ENSG00000203737	GPR52	G protein-coupled receptor 52	2.6462	0.0000
7	ENSG00000231292	IGKV1OR2-108	immunoglobulin kappa variable 1/OR2-108 (non-functional)	2.6055	0.0000
8	ENSG00000112214	FHL5	four and a half LIM domains 5	2.5850	0.0001
9	ENSG00000197550		zinc finger pseudogene	2.5850	0.0001
10	ENSG00000199886	RNU6-249P	RNA, U6 small nuclear 249, pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000112110	MRPL18	mitochondrial ribosomal protein L18	-2.2693	0.0000
63172	ENSG00000211813	TRAV34	T cell receptor alpha variable 34	-2.2691	0.1474
63171	ENSG00000206716	RNU6-133P	RNA, U6 small nuclear 133, pseudogene	-2.2691	0.2341
63170	ENSG00000254574		novel transcript	-2.2690	0.0000
63169	ENSG00000272720		novel transcript, antisense to BAIAP2L2	-2.2686	0.0000
63168	ENSG00000163424	TEX55	testis expressed 55	-2.2680	0.0000
63167	ENSG00000229289		novel transcript	-2.2680	0.0630
63166	ENSG00000227489		novel transcript	-2.2680	0.0630
63165	ENSG00000256797	KLRF2	killer cell lectin like receptor F2	-2.2677	0.0000
63164	ENSG00000141582	CBX4	chromobox 4	-2.2675	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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