Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773642

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773642 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M269	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000235637		novel transcript	3.0271	0.0000
2	ENSG00000207871	MIR513B	microRNA 513b	3.0247	0.0000
3	ENSG00000254163		novel transcript	3.0000	0.0000
4	ENSG00000253412	IGHVIII-13-1	immunoglobulin heavy variable (III)-13-1 (pseudogene)	2.8074	0.0000
5	ENSG00000253709	IGHV1-14	immunoglobulin heavy variable 1-14 (pseudogene)	2.8074	0.0000
6	ENSG00000203737	GPR52	G protein-coupled receptor 52	2.6462	0.0000
7	ENSG00000231292	IGKV1OR2-108	immunoglobulin kappa variable 1/OR2-108 (non-functional)	2.6055	0.0000
8	ENSG00000112214	FHL5	four and a half LIM domains 5	2.5850	0.0001
9	ENSG00000197550		zinc finger pseudogene	2.5850	0.0001
10	ENSG00000199886	RNU6-249P	RNA, U6 small nuclear 249, pseudogene	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000176912	TYMSOS	TYMS opposite strand	-2.2923	0.0000
63220	ENSG00000277758		synaptotagmin-15	-2.2923	0.0000
63219	ENSG00000176510	OR10AC1	olfactory receptor family 10 subfamily AC member 1 (gene/pseudogene)	-2.2921	0.0000
63218	ENSG00000185963	BICD2	BICD cargo adaptor 2	-2.2918	0.0000
63217	ENSG00000273139		novel transcript	-2.2912	0.0000
63216	ENSG00000262352	LINC02564	long intergenic non-protein coding RNA 2564	-2.2908	0.0000
63215	ENSG00000010270	STARD3NL	STARD3 N-terminal like	-2.2905	0.0000
63214	ENSG00000187664	HAPLN4	hyaluronan and proteoglycan link protein 4	-2.2902	0.0000
63213	ENSG00000188859	FAM78B	family with sequence similarity 78 member B	-2.2895	0.0000
63212	ENSG00000244242	IFITM10	interferon induced transmembrane protein 10	-2.2893	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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