SHOGoiN Cell Methylome: GSM2773642

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773642


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M269Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235637 novel transcript 3.0271 0.0000
2 ENSG00000207871 MIR513B microRNA 513b 3.0247 0.0000
3 ENSG00000254163 novel transcript 3.0000 0.0000
4 ENSG00000253412 IGHVIII-13-1 immunoglobulin heavy variable (III)-13-1 (pseudogene) 2.8074 0.0000
5 ENSG00000253709 IGHV1-14 immunoglobulin heavy variable 1-14 (pseudogene) 2.8074 0.0000
6 ENSG00000203737 GPR52 G protein-coupled receptor 52 2.6462 0.0000
7 ENSG00000231292 IGKV1OR2-108 immunoglobulin kappa variable 1/OR2-108 (non-functional) 2.6055 0.0000
8 ENSG00000112214 FHL5 four and a half LIM domains 5 2.5850 0.0001
9 ENSG00000197550 zinc finger pseudogene 2.5850 0.0001
10 ENSG00000199886 RNU6-249P RNA, U6 small nuclear 249, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000260253 novel transcript, overlapping to DUSP4 -2.3227 0.0000
63340 ENSG00000235354 RPS29P16 ribosomal protein S29 pseudogene 16 -2.3220 0.0000
63338 ENSG00000280432 TEC -2.3219 1.0000
63337 ENSG00000275226 LINC00547 long intergenic non-protein coding RNA 547 -2.3219 1.0000
63336 ENSG00000274663 RNA5SP526 RNA, 5S ribosomal pseudogene 526 -2.3219 0.6187
63335 ENSG00000273550 novel transcript -2.3219 0.0043
63334 ENSG00000272123 novel transcript, antisense to ITGA2 -2.3219 1.0000
63333 ENSG00000271439 HIG1 hypoxia inducible domain family, member 1C (HIGD1C) pseudogene -2.3219 1.0000
10 ENSG00000199886 RNU6-249P RNA, U6 small nuclear 249, pseudogene 2.5850 0.0000
9 ENSG00000197550 zinc finger pseudogene 2.5850 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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