Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773642

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773642


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M269Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235637 novel transcript 3.0271 0.0000
2 ENSG00000207871 MIR513B microRNA 513b 3.0247 0.0000
3 ENSG00000254163 novel transcript 3.0000 0.0000
4 ENSG00000253412 IGHVIII-13-1 immunoglobulin heavy variable (III)-13-1 (pseudogene) 2.8074 0.0000
5 ENSG00000253709 IGHV1-14 immunoglobulin heavy variable 1-14 (pseudogene) 2.8074 0.0000
6 ENSG00000203737 GPR52 G protein-coupled receptor 52 2.6462 0.0000
7 ENSG00000231292 IGKV1OR2-108 immunoglobulin kappa variable 1/OR2-108 (non-functional) 2.6055 0.0000
8 ENSG00000112214 FHL5 four and a half LIM domains 5 2.5850 0.0001
9 ENSG00000197550 zinc finger pseudogene 2.5850 0.0001
10 ENSG00000199886 RNU6-249P RNA, U6 small nuclear 249, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000112110 MRPL18 mitochondrial ribosomal protein L18 -2.2693 0.0000
63172 ENSG00000211813 TRAV34 T cell receptor alpha variable 34 -2.2691 0.1474
63171 ENSG00000206716 RNU6-133P RNA, U6 small nuclear 133, pseudogene -2.2691 0.2341
63170 ENSG00000254574 novel transcript -2.2690 0.0000
63169 ENSG00000272720 novel transcript, antisense to BAIAP2L2 -2.2686 0.0000
63168 ENSG00000163424 TEX55 testis expressed 55 -2.2680 0.0000
63167 ENSG00000229289 novel transcript -2.2680 0.0630
63166 ENSG00000227489 novel transcript -2.2680 0.0630
63165 ENSG00000256797 KLRF2 killer cell lectin like receptor F2 -2.2677 0.0000
63164 ENSG00000141582 CBX4 chromobox 4 -2.2675 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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