SHOGoiN Cell Methylome: GSM2773643

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773643


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M270Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000083782 EPYC epiphycan 3.0000 0.0000
2 ENSG00000227011 C17orf112 chromosome 17 open reading frame 112 2.5850 0.0000
3 ENSG00000238561 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene 2.5850 0.0000
4 ENSG00000223208 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene 2.3219 0.0000
5 ENSG00000227073 SDHDP2 succinate dehydrogenase complex subunit D pseudogene 2 2.3219 0.0002
6 ENSG00000230891 LINC00692 long intergenic non-protein coding RNA 692 2.3219 0.0000
7 ENSG00000230968 novel transcript 2.3219 0.0002
8 ENSG00000235303 novel transcript 2.2691 0.0000
9 ENSG00000227054 FDX1P2 ferredoxin 1 pseudogene 2 2.0888 0.0000
10 ENSG00000207874 MIR610 microRNA 610 2.0000 0.0016

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000163909 HEYL hes related family bHLH transcription factor with YRPW motif like -2.1895 0.0000
63340 ENSG00000206679 NA -2.1893 0.0000
63339 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -2.1892 0.0000
63338 ENSG00000116985 BMP8B bone morphogenetic protein 8b -2.1892 0.0000
63337 ENSG00000162040 HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 -2.1884 0.0000
63336 ENSG00000124205 EDN3 endothelin 3 -2.1881 0.0000
63335 ENSG00000284234 TAF11L5 TATA-box binding protein associated factor 11 like 5 -2.1880 0.0000
63334 ENSG00000167925 GHDC GH3 domain containing -2.1877 0.0000
63333 ENSG00000233608 TWIST2 twist family bHLH transcription factor 2 -2.1876 0.0000
63332 ENSG00000092096 SLC22A17 solute carrier family 22 member 17 -2.1874 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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