SHOGoiN Cell Methylome: GSM2773643
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773643 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M270 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000083782 | EPYC | epiphycan | 3.0000 | 0.0000 |
| 2 | ENSG00000227011 | C17orf112 | chromosome 17 open reading frame 112 | 2.5850 | 0.0000 |
| 3 | ENSG00000238561 | RNU6ATAC28P | RNA, U6atac small nuclear 28, pseudogene | 2.5850 | 0.0000 |
| 4 | ENSG00000223208 | RNU6-1217P | RNA, U6 small nuclear 1217, pseudogene | 2.3219 | 0.0000 |
| 5 | ENSG00000227073 | SDHDP2 | succinate dehydrogenase complex subunit D pseudogene 2 | 2.3219 | 0.0002 |
| 6 | ENSG00000230891 | LINC00692 | long intergenic non-protein coding RNA 692 | 2.3219 | 0.0000 |
| 7 | ENSG00000230968 | novel transcript | 2.3219 | 0.0002 | |
| 8 | ENSG00000235303 | novel transcript | 2.2691 | 0.0000 | |
| 9 | ENSG00000227054 | FDX1P2 | ferredoxin 1 pseudogene 2 | 2.0888 | 0.0000 |
| 10 | ENSG00000207874 | MIR610 | microRNA 610 | 2.0000 | 0.0016 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000163909 | HEYL | hes related family bHLH transcription factor with YRPW motif like | -2.1895 | 0.0000 |
| 63340 | ENSG00000206679 | NA | -2.1893 | 0.0000 | |
| 63339 | ENSG00000120055 | C10orf95 | chromosome 10 open reading frame 95 | -2.1892 | 0.0000 |
| 63338 | ENSG00000116985 | BMP8B | bone morphogenetic protein 8b | -2.1892 | 0.0000 |
| 63337 | ENSG00000162040 | HS3ST6 | heparan sulfate-glucosamine 3-sulfotransferase 6 | -2.1884 | 0.0000 |
| 63336 | ENSG00000124205 | EDN3 | endothelin 3 | -2.1881 | 0.0000 |
| 63335 | ENSG00000284234 | TAF11L5 | TATA-box binding protein associated factor 11 like 5 | -2.1880 | 0.0000 |
| 63334 | ENSG00000167925 | GHDC | GH3 domain containing | -2.1877 | 0.0000 |
| 63333 | ENSG00000233608 | TWIST2 | twist family bHLH transcription factor 2 | -2.1876 | 0.0000 |
| 63332 | ENSG00000092096 | SLC22A17 | solute carrier family 22 member 17 | -2.1874 | 0.0000 |
