Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773643

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773643


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M270Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000083782 EPYC epiphycan 3.0000 0.0000
2 ENSG00000227011 LINC02876 long intergenic non-protein coding RNA 2876 2.5850 0.0000
3 ENSG00000238561 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene 2.5850 0.0000
4 ENSG00000223208 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene 2.3219 0.0000
5 ENSG00000227073 SDHDP2 succinate dehydrogenase complex subunit D pseudogene 2 2.3219 0.0002
6 ENSG00000230891 LINC00692 long intergenic non-protein coding RNA 692 2.3219 0.0000
7 ENSG00000230968 novel transcript 2.3219 0.0002
8 ENSG00000235303 novel transcript 2.2691 0.0000
9 ENSG00000227054 FDX1P2 ferredoxin 1 pseudogene 2 2.0888 0.0000
10 ENSG00000207874 MIR610 microRNA 610 2.0000 0.0016

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000257275 novel transcript, antisense to TCL1A -2.1196 0.0000
63127 ENSG00000229782 novel transcript -2.1191 0.0000
63126 ENSG00000281883 novel transcript -2.1189 0.0000
63125 ENSG00000180730 SHISA2 shisa family member 2 -2.1189 0.0000
63124 ENSG00000200827 RNU6-324P RNA, U6 small nuclear 324, pseudogene -2.1186 0.0000
63123 ENSG00000224875 EML4-AS1 EML4 antisense RNA 1 -2.1172 0.0000
63122 ENSG00000185215 TNFAIP2 TNF alpha induced protein 2 -2.1166 0.0000
63121 ENSG00000115233 PSMD14 proteasome 26S subunit, non-ATPase 14 -2.1164 0.0000
63120 ENSG00000270482 novel transcript -2.1163 0.0000
63119 ENSG00000184523 PTGER4P2 prostaglandin E receptor 4 pseudogene 2 -2.1161 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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