Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773643
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773643
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M270
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000083782
EPYC
epiphycan
3.0000
0.0000
2
ENSG00000227011
LINC02876
long intergenic non-protein coding RNA 2876
2.5850
0.0000
3
ENSG00000238561
RNU6ATAC28P
RNA, U6atac small nuclear 28, pseudogene
2.5850
0.0000
4
ENSG00000223208
RNU6-1217P
RNA, U6 small nuclear 1217, pseudogene
2.3219
0.0000
5
ENSG00000227073
SDHDP2
succinate dehydrogenase complex subunit D pseudogene 2
2.3219
0.0002
6
ENSG00000230891
LINC00692
long intergenic non-protein coding RNA 692
2.3219
0.0000
7
ENSG00000230968
novel transcript
2.3219
0.0002
8
ENSG00000235303
novel transcript
2.2691
0.0000
9
ENSG00000227054
FDX1P2
ferredoxin 1 pseudogene 2
2.0888
0.0000
10
ENSG00000207874
MIR610
microRNA 610
2.0000
0.0016
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000257275
novel transcript, antisense to TCL1A
-2.1196
0.0000
63127
ENSG00000229782
novel transcript
-2.1191
0.0000
63126
ENSG00000281883
novel transcript
-2.1189
0.0000
63125
ENSG00000180730
SHISA2
shisa family member 2
-2.1189
0.0000
63124
ENSG00000200827
RNU6-324P
RNA, U6 small nuclear 324, pseudogene
-2.1186
0.0000
63123
ENSG00000224875
EML4-AS1
EML4 antisense RNA 1
-2.1172
0.0000
63122
ENSG00000185215
TNFAIP2
TNF alpha induced protein 2
-2.1166
0.0000
63121
ENSG00000115233
PSMD14
proteasome 26S subunit, non-ATPase 14
-2.1164
0.0000
63120
ENSG00000270482
novel transcript
-2.1163
0.0000
63119
ENSG00000184523
PTGER4P2
prostaglandin E receptor 4 pseudogene 2
-2.1161
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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