Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773643

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773643 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M270	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000083782	EPYC	epiphycan	3.0000	0.0000
2	ENSG00000227011	LINC02876	long intergenic non-protein coding RNA 2876	2.5850	0.0000
3	ENSG00000238561	RNU6ATAC28P	RNA, U6atac small nuclear 28, pseudogene	2.5850	0.0000
4	ENSG00000223208	RNU6-1217P	RNA, U6 small nuclear 1217, pseudogene	2.3219	0.0000
5	ENSG00000227073	SDHDP2	succinate dehydrogenase complex subunit D pseudogene 2	2.3219	0.0002
6	ENSG00000230891	LINC00692	long intergenic non-protein coding RNA 692	2.3219	0.0000
7	ENSG00000230968		novel transcript	2.3219	0.0002
8	ENSG00000235303		novel transcript	2.2691	0.0000
9	ENSG00000227054	FDX1P2	ferredoxin 1 pseudogene 2	2.0888	0.0000
10	ENSG00000207874	MIR610	microRNA 610	2.0000	0.0016

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000257275		novel transcript, antisense to TCL1A	-2.1196	0.0000
63127	ENSG00000229782		novel transcript	-2.1191	0.0000
63126	ENSG00000281883		novel transcript	-2.1189	0.0000
63125	ENSG00000180730	SHISA2	shisa family member 2	-2.1189	0.0000
63124	ENSG00000200827	RNU6-324P	RNA, U6 small nuclear 324, pseudogene	-2.1186	0.0000
63123	ENSG00000224875	EML4-AS1	EML4 antisense RNA 1	-2.1172	0.0000
63122	ENSG00000185215	TNFAIP2	TNF alpha induced protein 2	-2.1166	0.0000
63121	ENSG00000115233	PSMD14	proteasome 26S subunit, non-ATPase 14	-2.1164	0.0000
63120	ENSG00000270482		novel transcript	-2.1163	0.0000
63119	ENSG00000184523	PTGER4P2	prostaglandin E receptor 4 pseudogene 2	-2.1161	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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