SHOGoiN Cell Methylome: GSM2773644

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773644


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M271Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275226 LINC00547 long intergenic non-protein coding RNA 547 3.3219 0.0000
2 ENSG00000252760 RNA5SP54 RNA, 5S ribosomal pseudogene 54 2.8074 0.0000
3 ENSG00000282327 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH 2.8074 0.0000
4 ENSG00000229521 MYCBP2-AS2 MYCBP2 antisense RNA 2 2.7629 0.0000
5 ENSG00000224698 novel transcript 2.5850 0.0000
6 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 2.5850 0.0000
7 ENSG00000238386 RNU7-48P RNA, U7 small nuclear 48 pseudogene 2.5850 0.0000
8 ENSG00000253994 NDUFB9P3 NADH:ubiquinone oxidoreductase subunit B9 pseudogene 3 2.5850 0.0000
9 ENSG00000207800 MIR504 microRNA 504 2.3219 0.0003
10 ENSG00000211789 TRAV12-2 T cell receptor alpha variable 12-2 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000260927 novel transcript, antisense to CSNK2A2 -2.1557 0.0000
63340 ENSG00000183921 SDR42E2 short chain dehydrogenase/reductase family 42E, member 2 -2.1557 0.0000
63339 ENSG00000173960 UBXN2A UBX domain protein 2A -2.1556 0.0000
63338 ENSG00000225067 RPL23AP2 ribosomal protein L23a pseudogene 2 -2.1551 0.0000
63337 ENSG00000181029 TRAPPC5 trafficking protein particle complex 5 -2.1550 0.0000
63336 ENSG00000248375 novel pseudogene -2.1548 0.0000
63335 ENSG00000201355 RNA5S14 RNA, 5S ribosomal 14 -2.1548 0.0000
63334 ENSG00000169181 GSG1L GSG1 like -2.1546 0.0000
63333 ENSG00000279172 TEC -2.1545 0.0000
63332 ENSG00000276183 NA -2.1538 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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