Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773644

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773644


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M271Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275226 LINC00547 long intergenic non-protein coding RNA 547 3.3219 0.0000
2 ENSG00000252760 RNA5SP54 RNA, 5S ribosomal pseudogene 54 2.8074 0.0000
3 ENSG00000282327 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH 2.8074 0.0000
4 ENSG00000229521 MYCBP2-AS2 MYCBP2 antisense RNA 2 2.7629 0.0000
5 ENSG00000224698 novel transcript 2.5850 0.0000
6 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 2.5850 0.0000
7 ENSG00000238386 RNU7-48P RNA, U7 small nuclear 48 pseudogene 2.5850 0.0000
8 ENSG00000253994 NDUFB9P3 NADH:ubiquinone oxidoreductase subunit B9 pseudogene 3 2.5850 0.0000
9 ENSG00000207800 MIR504 microRNA 504 2.3219 0.0003
10 ENSG00000211789 TRAV12-2 T cell receptor alpha variable 12-2 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000135974 C2orf49 chromosome 2 open reading frame 49 -2.0812 0.0000
63127 ENSG00000154727 GABPA GA binding protein transcription factor subunit alpha -2.0807 0.0000
63126 ENSG00000168811 IL12A interleukin 12A -2.0806 0.0000
63125 ENSG00000187747 OR52B6 olfactory receptor family 52 subfamily B member 6 -2.0799 0.0417
63124 ENSG00000261052 SULT1A3 sulfotransferase family 1A member 3 -2.0798 0.0000
63123 ENSG00000252550 NA -2.0797 0.1537
63122 ENSG00000224418 STK24-AS1 STK24 antisense RNA 1 -2.0796 0.0000
63121 ENSG00000148429 USP6NL USP6 N-terminal like -2.0793 0.0000
63120 ENSG00000227403 LINC01806 long intergenic non-protein coding RNA 1806 -2.0785 0.0000
63119 ENSG00000258655 ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) -2.0785 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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