SHOGoiN Cell Methylome: GSM2773645
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773645 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M272 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000277701 | novel transcript | 2.8074 | 0.0000 | |
| 2 | ENSG00000235334 | BTG3P1 | BTG anti-proliferation factor 3 pseudogene 1 | 2.3219 | 0.0002 |
| 3 | ENSG00000239395 | novel protein | 2.2146 | 0.0000 | |
| 4 | ENSG00000241128 | OR14A2 | olfactory receptor family 14 subfamily A member 2 | 2.2146 | 0.0000 |
| 5 | ENSG00000226705 | SDCBPP1 | syndecan binding protein pseudogene 1 | 2.0000 | 0.0000 |
| 6 | ENSG00000236085 | ACTG1P4 | actin gamma 1 pseudogene 4 | 2.0000 | 0.0016 |
| 7 | ENSG00000236243 | RPL6P29 | ribosomal protein L6 pseudogene 29 | 2.0000 | 0.0000 |
| 8 | ENSG00000255196 | OR4A17P | olfactory receptor family 4 subfamily A member 17 pseudogene | 2.0000 | 0.0016 |
| 9 | ENSG00000255418 | novel transcript | 1.8813 | 0.0000 | |
| 10 | ENSG00000279029 | TEC | 1.8700 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000163376 | KBTBD8 | kelch repeat and BTB domain containing 8 | -2.1128 | 0.0000 |
| 63340 | ENSG00000270601 | PRAMEF5 | PRAME family member 5 | -2.1121 | 0.0191 |
| 63339 | ENSG00000258719 | novel transcript, antisense to NRXN3 | -2.1121 | 0.0301 | |
| 63338 | ENSG00000138622 | HCN4 | hyperpolarization activated cyclic nucleotide gated potassium channel 4 | -2.1114 | 0.0000 |
| 63337 | ENSG00000258504 | novel transcript | -2.1114 | 0.0000 | |
| 63336 | ENSG00000082497 | SERTAD4 | SERTA domain containing 4 | -2.1107 | 0.0000 |
| 63335 | ENSG00000173598 | NUDT4 | nudix hydrolase 4 | -2.1104 | 0.0000 |
| 63334 | ENSG00000246898 | LINC00920 | long intergenic non-protein coding RNA 920 | -2.1103 | 0.0000 |
| 63333 | ENSG00000207168 | SNORA15 | small nucleolar RNA, H/ACA box 15 | -2.1101 | 0.0000 |
| 63332 | ENSG00000207935 | MIR204 | microRNA 204 | -2.1096 | 0.0000 |
