Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773645
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773645
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M272
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000277701
novel transcript
2.8074
0.0000
2
ENSG00000235334
BTG3P1
BTG anti-proliferation factor 3 pseudogene 1
2.3219
0.0002
3
ENSG00000239395
novel protein
2.2146
0.0000
4
ENSG00000241128
OR14A2
olfactory receptor family 14 subfamily A member 2
2.2146
0.0000
5
ENSG00000226705
SDCBPP1
syndecan binding protein pseudogene 1
2.0000
0.0000
6
ENSG00000236085
ACTG1P4
actin gamma 1 pseudogene 4
2.0000
0.0016
7
ENSG00000236243
RPL6P29
ribosomal protein L6 pseudogene 29
2.0000
0.0000
8
ENSG00000255196
OR4A17P
olfactory receptor family 4 subfamily A member 17 pseudogene
2.0000
0.0016
9
ENSG00000255418
LINC02718
long intergenic non-protein coding RNA 2718
1.8813
0.0000
10
ENSG00000279029
TEC
1.8700
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000180998
GPR137C
G protein-coupled receptor 137C
-2.0460
0.0000
63127
ENSG00000233608
TWIST2
twist family bHLH transcription factor 2
-2.0459
0.0000
63126
ENSG00000269054
ZNF497-AS1
ZNF497 antisense RNA 1
-2.0453
0.0000
63125
ENSG00000274977
galactose-3-O-sulfotransferase 4 (GAL3ST4) pseudogene
-2.0452
0.0000
63124
ENSG00000196449
YRDC
yrdC N6-threonylcarbamoyltransferase domain containing
-2.0452
0.0000
63123
ENSG00000229743
LINC01159
long intergenic non-protein coding RNA 1159
-2.0451
0.0000
63122
ENSG00000250149
novel transcript
-2.0451
0.0000
63121
ENSG00000167701
GPT
glutamic--pyruvic transaminase
-2.0450
0.0000
63120
ENSG00000223602
novel ankyrin repeat domain protein pseudogene
-2.0446
0.0000
63119
ENSG00000266643
MIR3677
microRNA 3677
-2.0445
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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