Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773645

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773645 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M272	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000277701		novel transcript	2.8074	0.0000
2	ENSG00000235334	BTG3P1	BTG anti-proliferation factor 3 pseudogene 1	2.3219	0.0002
3	ENSG00000239395		novel protein	2.2146	0.0000
4	ENSG00000241128	OR14A2	olfactory receptor family 14 subfamily A member 2	2.2146	0.0000
5	ENSG00000226705	SDCBPP1	syndecan binding protein pseudogene 1	2.0000	0.0000
6	ENSG00000236085	ACTG1P4	actin gamma 1 pseudogene 4	2.0000	0.0016
7	ENSG00000236243	RPL6P29	ribosomal protein L6 pseudogene 29	2.0000	0.0000
8	ENSG00000255196	OR4A17P	olfactory receptor family 4 subfamily A member 17 pseudogene	2.0000	0.0016
9	ENSG00000255418	LINC02718	long intergenic non-protein coding RNA 2718	1.8813	0.0000
10	ENSG00000279029		TEC	1.8700	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000180998	GPR137C	G protein-coupled receptor 137C	-2.0460	0.0000
63127	ENSG00000233608	TWIST2	twist family bHLH transcription factor 2	-2.0459	0.0000
63126	ENSG00000269054	ZNF497-AS1	ZNF497 antisense RNA 1	-2.0453	0.0000
63125	ENSG00000274977		galactose-3-O-sulfotransferase 4 (GAL3ST4) pseudogene	-2.0452	0.0000
63124	ENSG00000196449	YRDC	yrdC N6-threonylcarbamoyltransferase domain containing	-2.0452	0.0000
63123	ENSG00000229743	LINC01159	long intergenic non-protein coding RNA 1159	-2.0451	0.0000
63122	ENSG00000250149		novel transcript	-2.0451	0.0000
63121	ENSG00000167701	GPT	glutamic--pyruvic transaminase	-2.0450	0.0000
63120	ENSG00000223602		novel ankyrin repeat domain protein pseudogene	-2.0446	0.0000
63119	ENSG00000266643	MIR3677	microRNA 3677	-2.0445	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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