Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773645

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773645


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M272Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277701 novel transcript 2.8074 0.0000
2 ENSG00000235334 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 2.3219 0.0002
3 ENSG00000239395 novel protein 2.2146 0.0000
4 ENSG00000241128 OR14A2 olfactory receptor family 14 subfamily A member 2 2.2146 0.0000
5 ENSG00000226705 SDCBPP1 syndecan binding protein pseudogene 1 2.0000 0.0000
6 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 2.0000 0.0016
7 ENSG00000236243 RPL6P29 ribosomal protein L6 pseudogene 29 2.0000 0.0000
8 ENSG00000255196 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene 2.0000 0.0016
9 ENSG00000255418 LINC02718 long intergenic non-protein coding RNA 2718 1.8813 0.0000
10 ENSG00000279029 TEC 1.8700 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000180998 GPR137C G protein-coupled receptor 137C -2.0460 0.0000
63127 ENSG00000233608 TWIST2 twist family bHLH transcription factor 2 -2.0459 0.0000
63126 ENSG00000269054 ZNF497-AS1 ZNF497 antisense RNA 1 -2.0453 0.0000
63125 ENSG00000274977 galactose-3-O-sulfotransferase 4 (GAL3ST4) pseudogene -2.0452 0.0000
63124 ENSG00000196449 YRDC yrdC N6-threonylcarbamoyltransferase domain containing -2.0452 0.0000
63123 ENSG00000229743 LINC01159 long intergenic non-protein coding RNA 1159 -2.0451 0.0000
63122 ENSG00000250149 novel transcript -2.0451 0.0000
63121 ENSG00000167701 GPT glutamic--pyruvic transaminase -2.0450 0.0000
63120 ENSG00000223602 novel ankyrin repeat domain protein pseudogene -2.0446 0.0000
63119 ENSG00000266643 MIR3677 microRNA 3677 -2.0445 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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