SHOGoiN Cell Methylome: GSM2773645

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773645


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M272Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277701 novel transcript 2.8074 0.0000
2 ENSG00000235334 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 2.3219 0.0002
3 ENSG00000239395 novel protein 2.2146 0.0000
4 ENSG00000241128 OR14A2 olfactory receptor family 14 subfamily A member 2 2.2146 0.0000
5 ENSG00000226705 SDCBPP1 syndecan binding protein pseudogene 1 2.0000 0.0000
6 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 2.0000 0.0016
7 ENSG00000236243 RPL6P29 ribosomal protein L6 pseudogene 29 2.0000 0.0000
8 ENSG00000255196 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene 2.0000 0.0016
9 ENSG00000255418 novel transcript 1.8813 0.0000
10 ENSG00000279029 TEC 1.8700 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000163376 KBTBD8 kelch repeat and BTB domain containing 8 -2.1128 0.0000
63340 ENSG00000270601 PRAMEF5 PRAME family member 5 -2.1121 0.0191
63339 ENSG00000258719 novel transcript, antisense to NRXN3 -2.1121 0.0301
63338 ENSG00000138622 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 -2.1114 0.0000
63337 ENSG00000258504 novel transcript -2.1114 0.0000
63336 ENSG00000082497 SERTAD4 SERTA domain containing 4 -2.1107 0.0000
63335 ENSG00000173598 NUDT4 nudix hydrolase 4 -2.1104 0.0000
63334 ENSG00000246898 LINC00920 long intergenic non-protein coding RNA 920 -2.1103 0.0000
63333 ENSG00000207168 SNORA15 small nucleolar RNA, H/ACA box 15 -2.1101 0.0000
63332 ENSG00000207935 MIR204 microRNA 204 -2.1096 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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