SHOGoiN Cell Methylome: GSM2773646

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773646


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M273Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000215112 FAM74A1 family with sequence similarity 74 member A1 3.4594 0.0000
2 ENSG00000278475 novel transcript, sense intronic to ARID2 3.0000 0.0000
3 ENSG00000197023 OR51A6P olfactory receptor family 51 subfamily A member 6 pseudogene 2.8074 0.0000
4 ENSG00000214194 SMIM30 small integral membrane protein 30 2.7500 0.0000
5 ENSG00000202374 NA 2.5850 0.0000
6 ENSG00000233393 novel transcript 2.5850 0.0001
7 ENSG00000243886 mitochondrial carrier homolog 2 (C. elegans) (MTCH2) pseudogene 2.5850 0.0001
8 ENSG00000249135 RB1-inducible coiled-coil 1 (RB1CC1) pseudogene 2.5850 0.0001
9 ENSG00000267146 novel transcript, antisense to WDR7 2.5850 0.0001
10 ENSG00000274183 H2AFB1 H2A histone family member B1 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000235077 novel transcript -2.2488 0.0000
63340 ENSG00000131981 LGALS3 galectin 3 -2.2485 0.0000
63339 ENSG00000230547 HMGB1P11 high mobility group box 1 pseudogene 11 -2.2483 0.0282
63338 ENSG00000162981 LRATD1 LRAT domain containing 1 -2.2480 0.0000
63337 ENSG00000176842 IRX5 iroquois homeobox 5 -2.2480 0.0000
63336 ENSG00000142634 EFHD2 EF-hand domain family member D2 -2.2479 0.0000
63334 ENSG00000233765 CDRT15 protein pseudogene -2.2470 0.0111
63333 ENSG00000198973 MIR375 microRNA 375 -2.2465 0.0000
63332 ENSG00000103490 PYCARD PYD and CARD domain containing -2.2462 0.0000
10 ENSG00000274183 H2AFB1 H2A histone family member B1 2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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