Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773646

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773646 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M273	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000215112	FAM74A1	family with sequence similarity 74 member A1	3.4594	0.0000
2	ENSG00000278475		novel transcript, sense intronic to ARID2	3.0000	0.0000
3	ENSG00000197023	OR51A6P	olfactory receptor family 51 subfamily A member 6 pseudogene	2.8074	0.0000
4	ENSG00000214194	SMIM30	small integral membrane protein 30	2.7500	0.0000
5	ENSG00000202374		Small nucleolar RNA SNORA62/SNORA6 family	2.5850	0.0000
6	ENSG00000233393		novel transcript	2.5850	0.0001
7	ENSG00000243886		mitochondrial carrier homolog 2 (C. elegans) (MTCH2) pseudogene	2.5850	0.0001
8	ENSG00000249135		RB1-inducible coiled-coil 1 (RB1CC1) pseudogene	2.5850	0.0001
9	ENSG00000267146		novel transcript, antisense to WDR7	2.5850	0.0001
10	ENSG00000274183	H2AB1	H2A.B variant histone 1	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000203279		novel transcript	-2.1731	0.0000
63127	ENSG00000283694	MIR3202-2	microRNA 3202-2	-2.1730	0.0000
63126	ENSG00000136826	KLF4	Kruppel like factor 4	-2.1725	0.0000
63125	ENSG00000267342		novel transcript, antisense to MRPL38	-2.1725	0.0000
63124	ENSG00000120256	LRP11	LDL receptor related protein 11	-2.1724	0.0000
63123	ENSG00000130313	PGLS	6-phosphogluconolactonase	-2.1724	0.0000
63122	ENSG00000284375	MIR19B1	microRNA 19b-1	-2.1723	0.0000
63121	ENSG00000284204	MIR19A	microRNA 19a	-2.1723	0.0000
63120	ENSG00000283815	MIR18A	microRNA 18a	-2.1723	0.0000
63119	ENSG00000283762	MIR20A	microRNA 20a	-2.1723	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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