Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773646
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773646
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M273
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000215112
FAM74A1
family with sequence similarity 74 member A1
3.4594
0.0000
2
ENSG00000278475
novel transcript, sense intronic to ARID2
3.0000
0.0000
3
ENSG00000197023
OR51A6P
olfactory receptor family 51 subfamily A member 6 pseudogene
2.8074
0.0000
4
ENSG00000214194
SMIM30
small integral membrane protein 30
2.7500
0.0000
5
ENSG00000202374
Small nucleolar RNA SNORA62/SNORA6 family
2.5850
0.0000
6
ENSG00000233393
novel transcript
2.5850
0.0001
7
ENSG00000243886
mitochondrial carrier homolog 2 (C. elegans) (MTCH2) pseudogene
2.5850
0.0001
8
ENSG00000249135
RB1-inducible coiled-coil 1 (RB1CC1) pseudogene
2.5850
0.0001
9
ENSG00000267146
novel transcript, antisense to WDR7
2.5850
0.0001
10
ENSG00000274183
H2AB1
H2A.B variant histone 1
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000203279
novel transcript
-2.1731
0.0000
63127
ENSG00000283694
MIR3202-2
microRNA 3202-2
-2.1730
0.0000
63126
ENSG00000136826
KLF4
Kruppel like factor 4
-2.1725
0.0000
63125
ENSG00000267342
novel transcript, antisense to MRPL38
-2.1725
0.0000
63124
ENSG00000120256
LRP11
LDL receptor related protein 11
-2.1724
0.0000
63123
ENSG00000130313
PGLS
6-phosphogluconolactonase
-2.1724
0.0000
63122
ENSG00000284375
MIR19B1
microRNA 19b-1
-2.1723
0.0000
63121
ENSG00000284204
MIR19A
microRNA 19a
-2.1723
0.0000
63120
ENSG00000283815
MIR18A
microRNA 18a
-2.1723
0.0000
63119
ENSG00000283762
MIR20A
microRNA 20a
-2.1723
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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