Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773646

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773646


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M273Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000215112 FAM74A1 family with sequence similarity 74 member A1 3.4594 0.0000
2 ENSG00000278475 novel transcript, sense intronic to ARID2 3.0000 0.0000
3 ENSG00000197023 OR51A6P olfactory receptor family 51 subfamily A member 6 pseudogene 2.8074 0.0000
4 ENSG00000214194 SMIM30 small integral membrane protein 30 2.7500 0.0000
5 ENSG00000202374 Small nucleolar RNA SNORA62/SNORA6 family 2.5850 0.0000
6 ENSG00000233393 novel transcript 2.5850 0.0001
7 ENSG00000243886 mitochondrial carrier homolog 2 (C. elegans) (MTCH2) pseudogene 2.5850 0.0001
8 ENSG00000249135 RB1-inducible coiled-coil 1 (RB1CC1) pseudogene 2.5850 0.0001
9 ENSG00000267146 novel transcript, antisense to WDR7 2.5850 0.0001
10 ENSG00000274183 H2AB1 H2A.B variant histone 1 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000203279 novel transcript -2.1731 0.0000
63127 ENSG00000283694 MIR3202-2 microRNA 3202-2 -2.1730 0.0000
63126 ENSG00000136826 KLF4 Kruppel like factor 4 -2.1725 0.0000
63125 ENSG00000267342 novel transcript, antisense to MRPL38 -2.1725 0.0000
63124 ENSG00000120256 LRP11 LDL receptor related protein 11 -2.1724 0.0000
63123 ENSG00000130313 PGLS 6-phosphogluconolactonase -2.1724 0.0000
63122 ENSG00000284375 MIR19B1 microRNA 19b-1 -2.1723 0.0000
63121 ENSG00000284204 MIR19A microRNA 19a -2.1723 0.0000
63120 ENSG00000283815 MIR18A microRNA 18a -2.1723 0.0000
63119 ENSG00000283762 MIR20A microRNA 20a -2.1723 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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