SHOGoiN Cell Methylome: GSM2773646
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773646 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M273 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000215112 | FAM74A1 | family with sequence similarity 74 member A1 | 3.4594 | 0.0000 |
| 2 | ENSG00000278475 | novel transcript, sense intronic to ARID2 | 3.0000 | 0.0000 | |
| 3 | ENSG00000197023 | OR51A6P | olfactory receptor family 51 subfamily A member 6 pseudogene | 2.8074 | 0.0000 |
| 4 | ENSG00000214194 | SMIM30 | small integral membrane protein 30 | 2.7500 | 0.0000 |
| 5 | ENSG00000202374 | NA | 2.5850 | 0.0000 | |
| 6 | ENSG00000233393 | novel transcript | 2.5850 | 0.0001 | |
| 7 | ENSG00000243886 | mitochondrial carrier homolog 2 (C. elegans) (MTCH2) pseudogene | 2.5850 | 0.0001 | |
| 8 | ENSG00000249135 | RB1-inducible coiled-coil 1 (RB1CC1) pseudogene | 2.5850 | 0.0001 | |
| 9 | ENSG00000267146 | novel transcript, antisense to WDR7 | 2.5850 | 0.0001 | |
| 10 | ENSG00000274183 | H2AFB1 | H2A histone family member B1 | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000235077 | novel transcript | -2.2488 | 0.0000 | |
| 63340 | ENSG00000131981 | LGALS3 | galectin 3 | -2.2485 | 0.0000 |
| 63339 | ENSG00000230547 | HMGB1P11 | high mobility group box 1 pseudogene 11 | -2.2483 | 0.0282 |
| 63338 | ENSG00000162981 | LRATD1 | LRAT domain containing 1 | -2.2480 | 0.0000 |
| 63337 | ENSG00000176842 | IRX5 | iroquois homeobox 5 | -2.2480 | 0.0000 |
| 63336 | ENSG00000142634 | EFHD2 | EF-hand domain family member D2 | -2.2479 | 0.0000 |
| 63334 | ENSG00000233765 | CDRT15 protein pseudogene | -2.2470 | 0.0111 | |
| 63333 | ENSG00000198973 | MIR375 | microRNA 375 | -2.2465 | 0.0000 |
| 63332 | ENSG00000103490 | PYCARD | PYD and CARD domain containing | -2.2462 | 0.0000 |
| 10 | ENSG00000274183 | H2AFB1 | H2A histone family member B1 | 2.5850 | 0.0000 |
