Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773647

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773647


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M274Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000197320 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 (CPAMD8) pseudogene 3.1640 0.0000
2 ENSG00000258342 novel transcript, sense overlapping BRMS1L 2.8074 0.0000
3 ENSG00000273825 otopetrin 1 (OTOP1) pseudogene 2.8074 0.0000
4 ENSG00000179452 LINC01699 long intergenic non-protein coding RNA 1699 2.5850 0.0000
5 ENSG00000254021 novel transcript 2.5850 0.0000
6 ENSG00000229876 CASC20 cancer susceptibility 20 2.3219 0.0000
7 ENSG00000232100 LINC01653 long intergenic non-protein coding RNA 1653 2.3219 0.0002
8 ENSG00000255094 novel transcript 2.3219 0.0002
9 ENSG00000255210 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa (POLR2E) pseudogene 2.3219 0.0002
10 ENSG00000259179 UBE2CP4 ubiquitin conjugating enzyme E2 C pseudogene 4 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000279954 novel transcript -2.1642 0.0000
63127 ENSG00000138744 NAAA N-acylethanolamine acid amidase -2.1642 0.0000
63126 ENSG00000164823 OSGIN2 oxidative stress induced growth inhibitor family member 2 -2.1641 0.0000
63125 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene -2.1640 0.6289
63124 ENSG00000176236 RPP38-DT RPP38 divergent transcript -2.1632 0.0000
63123 ENSG00000054277 OPN3 opsin 3 -2.1632 0.0000
63122 ENSG00000103460 TOX3 TOX high mobility group box family member 3 -2.1631 0.0000
63121 ENSG00000249906 novel transcript -2.1631 0.0000
63120 ENSG00000244242 IFITM10 interferon induced transmembrane protein 10 -2.1631 0.0000
63119 ENSG00000237773 novel transcript -2.1625 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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