SHOGoiN Cell Methylome: GSM2773647

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773647


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M274Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000197320 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 (CPAMD8) pseudogene 3.1640 0.0000
2 ENSG00000258342 novel transcript, sense overlapping BRMS1L 2.8074 0.0000
3 ENSG00000273825 otopetrin 1 (OTOP1) pseudogene 2.8074 0.0000
4 ENSG00000179452 LINC01699 long intergenic non-protein coding RNA 1699 2.5850 0.0000
5 ENSG00000254021 novel transcript 2.5850 0.0000
6 ENSG00000229876 CASC20 cancer susceptibility 20 2.3219 0.0000
7 ENSG00000232100 LINC01653 long intergenic non-protein coding RNA 1653 2.3219 0.0002
8 ENSG00000255094 novel transcript 2.3219 0.0002
9 ENSG00000255210 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa (POLR2E) pseudogene 2.3219 0.0002
10 ENSG00000259179 UBE2CP4 ubiquitin conjugating enzyme E2 C pseudogene 4 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000213820 RPL13P2 ribosomal protein L13 pseudogene 2 -2.2266 0.0000
63340 ENSG00000225979 novel transcript -2.2265 0.0000
63339 ENSG00000273988 chromosome X open reading frame 48 (CXorf48) pseudogene -2.2260 0.0000
63338 ENSG00000081041 CXCL2 C-X-C motif chemokine ligand 2 -2.2256 0.0000
63337 ENSG00000175606 TMEM70 transmembrane protein 70 -2.2253 0.0000
63336 ENSG00000242110 AMACR alpha-methylacyl-CoA racemase -2.2251 0.0000
63335 ENSG00000188613 NANOS1 nanos C2HC-type zinc finger 1 -2.2251 0.0000
63334 ENSG00000107562 CXCL12 C-X-C motif chemokine ligand 12 -2.2247 0.0000
63333 ENSG00000225428 NDUFB4P7 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 7 -2.2246 0.0000
63332 ENSG00000148154 UGCG UDP-glucose ceramide glucosyltransferase -2.2246 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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