Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773648
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773648
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M275
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000223597
LINC02142
long intergenic non-protein coding RNA 2142
3.0419
0.0000
2
ENSG00000249865
novel transcript
3.0419
0.0000
3
ENSG00000254075
IGLVV-66
immunoglobulin lambda variable (V)-66 (pseudogene)
3.0060
0.0000
4
ENSG00000271486
NIPA2P3
NIPA2 pseudogene 3
3.0000
0.0003
5
ENSG00000253874
IGLVIV-66-1
immunoglobulin lambda variable (IV)-66-1 (pseudogene)
2.8806
0.0000
6
ENSG00000206672
Y RNA
2.8074
0.0010
7
ENSG00000254866
DEFB109D
defensin beta 109D (pseudogene)
2.7925
0.0000
8
ENSG00000280136
novel transcript
2.6365
0.0000
9
ENSG00000238231
interferon-induced transmembrane protein pseudogene
2.6176
0.0000
10
ENSG00000199622
RN7SKP20
RN7SK pseudogene 20
2.5850
0.0033
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000225764
P3H2-AS1
P3H2 antisense RNA 1
-1.6399
0.0000
63127
ENSG00000102931
ARL2BP
ADP ribosylation factor like GTPase 2 binding protein
-1.6399
0.0000
63126
ENSG00000231550
PTCHD3P2
patched domain containing 3 pseudogene 2
-1.6386
0.0000
63125
ENSG00000120324
PCDHB10
protocadherin beta 10
-1.6382
0.0000
63124
ENSG00000260035
novel transcript
-1.6379
0.0000
63123
ENSG00000151883
PARP8
poly(ADP-ribose) polymerase family member 8
-1.6375
0.0000
63122
ENSG00000174521
TTC9B
tetratricopeptide repeat domain 9B
-1.6366
0.0000
63121
ENSG00000264735
novel transcript
-1.6365
0.0000
63120
ENSG00000145975
FAM217A
family with sequence similarity 217 member A
-1.6361
0.0000
63119
ENSG00000273015
novel transcript
-1.6360
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...