SHOGoiN Cell Methylome: GSM2773648
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773648 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M275 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000223597 | LINC02142 | long intergenic non-protein coding RNA 2142 | 3.0419 | 0.0000 |
| 2 | ENSG00000249865 | novel transcript | 3.0419 | 0.0000 | |
| 3 | ENSG00000254075 | IGLVV-66 | immunoglobulin lambda variable (V)-66 (pseudogene) | 3.0060 | 0.0000 |
| 4 | ENSG00000271486 | non imprinted in Prader-Willi/Angelman syndrome 2 (NIPA2) pseudogene | 3.0000 | 0.0003 | |
| 5 | ENSG00000253874 | IGLVIV-66-1 | immunoglobulin lambda variable (IV)-66-1 (pseudogene) | 2.8806 | 0.0000 |
| 6 | ENSG00000206672 | NA | 2.8074 | 0.0010 | |
| 7 | ENSG00000254866 | DEFB109D | defensin beta 109D (pseudogene) | 2.7925 | 0.0000 |
| 8 | ENSG00000280136 | novel transcript | 2.6365 | 0.0000 | |
| 9 | ENSG00000238231 | interferon-induced transmembrane protein pseudogene | 2.6176 | 0.0000 | |
| 10 | ENSG00000199622 | RN7SKP20 | RN7SK pseudogene 20 | 2.5850 | 0.0033 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000267159 | novel transcript, antisense to ARID3A | -1.7161 | 0.0000 | |
| 63340 | ENSG00000278946 | novel transcript, antisense to PCDHA10 | -1.7156 | 0.0000 | |
| 63339 | ENSG00000274712 | novel transcript | -1.7152 | 0.0000 | |
| 63338 | ENSG00000280904 | NA | -1.7137 | 0.0000 | |
| 63337 | ENSG00000252787 | NA | -1.7137 | 0.0000 | |
| 63336 | ENSG00000110245 | APOC3 | apolipoprotein C3 | -1.7132 | 0.0000 |
| 63335 | ENSG00000200213 | RNU6-992P | RNA, U6 small nuclear 992, pseudogene | -1.7130 | 0.0000 |
| 63334 | ENSG00000252660 | NA | -1.7112 | 0.0000 | |
| 63333 | ENSG00000266782 | MIR3663 | microRNA 3663 | -1.7110 | 0.0000 |
| 63332 | ENSG00000224109 | CENPVL3 | centromere protein V like 3 | -1.7109 | 0.0000 |
