Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773648

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773648


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M275Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223597 LINC02142 long intergenic non-protein coding RNA 2142 3.0419 0.0000
2 ENSG00000249865 novel transcript 3.0419 0.0000
3 ENSG00000254075 IGLVV-66 immunoglobulin lambda variable (V)-66 (pseudogene) 3.0060 0.0000
4 ENSG00000271486 NIPA2P3 NIPA2 pseudogene 3 3.0000 0.0003
5 ENSG00000253874 IGLVIV-66-1 immunoglobulin lambda variable (IV)-66-1 (pseudogene) 2.8806 0.0000
6 ENSG00000206672 Y RNA 2.8074 0.0010
7 ENSG00000254866 DEFB109D defensin beta 109D (pseudogene) 2.7925 0.0000
8 ENSG00000280136 novel transcript 2.6365 0.0000
9 ENSG00000238231 interferon-induced transmembrane protein pseudogene 2.6176 0.0000
10 ENSG00000199622 RN7SKP20 RN7SK pseudogene 20 2.5850 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000225764 P3H2-AS1 P3H2 antisense RNA 1 -1.6399 0.0000
63127 ENSG00000102931 ARL2BP ADP ribosylation factor like GTPase 2 binding protein -1.6399 0.0000
63126 ENSG00000231550 PTCHD3P2 patched domain containing 3 pseudogene 2 -1.6386 0.0000
63125 ENSG00000120324 PCDHB10 protocadherin beta 10 -1.6382 0.0000
63124 ENSG00000260035 novel transcript -1.6379 0.0000
63123 ENSG00000151883 PARP8 poly(ADP-ribose) polymerase family member 8 -1.6375 0.0000
63122 ENSG00000174521 TTC9B tetratricopeptide repeat domain 9B -1.6366 0.0000
63121 ENSG00000264735 novel transcript -1.6365 0.0000
63120 ENSG00000145975 FAM217A family with sequence similarity 217 member A -1.6361 0.0000
63119 ENSG00000273015 novel transcript -1.6360 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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