SHOGoiN Cell Methylome: GSM2773648

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773648


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M275Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223597 LINC02142 long intergenic non-protein coding RNA 2142 3.0419 0.0000
2 ENSG00000249865 novel transcript 3.0419 0.0000
3 ENSG00000254075 IGLVV-66 immunoglobulin lambda variable (V)-66 (pseudogene) 3.0060 0.0000
4 ENSG00000271486 non imprinted in Prader-Willi/Angelman syndrome 2 (NIPA2) pseudogene 3.0000 0.0003
5 ENSG00000253874 IGLVIV-66-1 immunoglobulin lambda variable (IV)-66-1 (pseudogene) 2.8806 0.0000
6 ENSG00000206672 NA 2.8074 0.0010
7 ENSG00000254866 DEFB109D defensin beta 109D (pseudogene) 2.7925 0.0000
8 ENSG00000280136 novel transcript 2.6365 0.0000
9 ENSG00000238231 interferon-induced transmembrane protein pseudogene 2.6176 0.0000
10 ENSG00000199622 RN7SKP20 RN7SK pseudogene 20 2.5850 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000267159 novel transcript, antisense to ARID3A -1.7161 0.0000
63340 ENSG00000278946 novel transcript, antisense to PCDHA10 -1.7156 0.0000
63339 ENSG00000274712 novel transcript -1.7152 0.0000
63338 ENSG00000280904 NA -1.7137 0.0000
63337 ENSG00000252787 NA -1.7137 0.0000
63336 ENSG00000110245 APOC3 apolipoprotein C3 -1.7132 0.0000
63335 ENSG00000200213 RNU6-992P RNA, U6 small nuclear 992, pseudogene -1.7130 0.0000
63334 ENSG00000252660 NA -1.7112 0.0000
63333 ENSG00000266782 MIR3663 microRNA 3663 -1.7110 0.0000
63332 ENSG00000224109 CENPVL3 centromere protein V like 3 -1.7109 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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