SHOGoiN Cell Methylome: GSM2773649

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773649


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M276Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266645 MIR4299 microRNA 4299 3.4594 0.0000
2 ENSG00000227023 OR51A3P olfactory receptor family 51 subfamily A member 3 pseudogene 3.3219 0.0000
3 ENSG00000201059 RNA5SP336 RNA, 5S ribosomal pseudogene 336 3.1699 0.0000
4 ENSG00000256162 SMLR1 small leucine rich protein 1 3.1699 0.0000
5 ENSG00000264379 NA 3.0000 0.0000
6 ENSG00000269397 novel transcript, sense intronic to ZNF726 3.0000 0.0000
7 ENSG00000250375 novel transcript 2.9359 0.0000
8 ENSG00000109181 UGT2B10 UDP glucuronosyltransferase family 2 member B10 2.8074 0.0000
9 ENSG00000228597 MTND4P1 MT-ND4 pseudogene 1 2.8074 0.0000
10 ENSG00000232447 MTND5P3 MT-ND5 pseudogene 3 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000278935 novel transcript -2.5000 0.3768
63340 ENSG00000251176 novel transcript -2.5000 0.0629
63339 ENSG00000170542 SERPINB9 serpin family B member 9 -2.4998 0.0000
63338 ENSG00000277469 NA -2.4995 0.0000
63337 ENSG00000153250 RBMS1 RNA binding motif single stranded interacting protein 1 -2.4992 0.0000
63336 ENSG00000169740 ZNF32 zinc finger protein 32 -2.4990 0.0000
63335 ENSG00000163660 CCNL1 cyclin L1 -2.4981 0.0000
63334 ENSG00000261411 novel transcript -2.4979 0.0000
63333 ENSG00000269037 LINC01838 long intergenic non-protein coding RNA 1838 -2.4968 0.0000
63332 ENSG00000256879 novel transcript -2.4957 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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