Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773649

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773649


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M276Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266645 MIR4299 microRNA 4299 3.4594 0.0000
2 ENSG00000227023 OR51A3P olfactory receptor family 51 subfamily A member 3 pseudogene 3.3219 0.0000
3 ENSG00000201059 RNA5SP336 RNA, 5S ribosomal pseudogene 336 3.1699 0.0000
4 ENSG00000256162 SMLR1 small leucine rich protein 1 3.1699 0.0000
5 ENSG00000264379 Small nucleolar RNA SNORD55/SNORD39 3.0000 0.0000
6 ENSG00000269397 novel transcript, sense intronic to ZNF726 3.0000 0.0000
7 ENSG00000250375 novel transcript 2.9359 0.0000
8 ENSG00000109181 UGT2B10 UDP glucuronosyltransferase family 2 member B10 2.8074 0.0000
9 ENSG00000228597 MTND4P1 MT-ND4 pseudogene 1 2.8074 0.0000
10 ENSG00000232447 MTND5P3 MT-ND5 pseudogene 3 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000256742 KDM2B-DT KDM2B divergent transcript -2.4105 0.0000
63127 ENSG00000269068 novel transcript, antisense to OBSL1 -2.4103 0.0000
63126 ENSG00000185155 MIXL1 Mix paired-like homeobox -2.4097 0.0000
63125 ENSG00000196935 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 -2.4096 0.0000
63124 ENSG00000283052 LINC02456 long intergenic non-protein coding RNA 2456 -2.4096 0.2386
63123 ENSG00000236565 HNRNPA3P5 heterogeneous nuclear ribonucleoprotein A3 pseudogene 5 -2.4096 0.0426
63122 ENSG00000243136 RN7SL22P RNA, 7SL, cytoplasmic 22, pseudogene -2.4094 0.0000
63121 ENSG00000274177 novel transcript, antisense to TMEM259 -2.4088 0.0000
63120 ENSG00000284574 MIR6787 microRNA 6787 -2.4088 0.0000
63119 ENSG00000252031 RNU6-561P RNA, U6 small nuclear 561, pseudogene -2.4081 0.0050

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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