SHOGoiN Cell Methylome: GSM2773650

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773650


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M277Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265102 MIR3942 microRNA 3942 3.3219 0.0000
2 ENSG00000169327 OR5AU1 olfactory receptor family 5 subfamily AU member 1 3.1699 0.0000
3 ENSG00000189043 NDUFA4 NDUFA4 mitochondrial complex associated 3.0000 0.0000
4 ENSG00000201529 NA 3.0000 0.0000
5 ENSG00000212518 RNU11-5P RNA, U11 small nuclear 5, pseudogene 3.0000 0.0000
6 ENSG00000258605 DYNLL1P2 dynein light chain LC8-type 1 pseudogene 2 3.0000 0.0000
7 ENSG00000259502 protein kinase C, eta (PRKCH) pseudogene 3.0000 0.0000
8 ENSG00000259648 high mobility group box 1 (HMGB1) pseudogene 3.0000 0.0000
9 ENSG00000271185 novel transcript 3.0000 0.0000
10 ENSG00000281228 NA 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000229569 novel transcript -2.2504 0.0185
63340 ENSG00000282022 novel transcript, antisense to PHC1 and A2ML1 -2.2482 0.0000
63339 ENSG00000165169 DYNLT3 dynein light chain Tctex-type 3 -2.2476 0.0000
63338 ENSG00000254483 SUGT1P4 SUGT1 pseudogene 4 -2.2462 0.0000
63337 ENSG00000203279 novel transcript -2.2462 0.0000
63336 ENSG00000184897 H1FX H1 histone family member X -2.2453 0.0000
63335 ENSG00000243164 ribosomal protein L31 (RPL31) pseudogene -2.2443 0.1533
63334 ENSG00000251347 IRF5P1 interferon regulatory factor 5 pseudogene 1 -2.2436 0.0000
63333 ENSG00000279160 TEC -2.2427 0.0000
63332 ENSG00000241666 novel transcript -2.2422 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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