Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773650

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773650


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M277Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265102 MIR3942 microRNA 3942 3.3219 0.0000
2 ENSG00000169327 OR5AU1 olfactory receptor family 5 subfamily AU member 1 3.1699 0.0000
3 ENSG00000189043 NDUFA4 NDUFA4 mitochondrial complex associated 3.0000 0.0000
4 ENSG00000201529 Y RNA 3.0000 0.0000
5 ENSG00000212518 RNU11-5P RNA, U11 small nuclear 5, pseudogene 3.0000 0.0000
6 ENSG00000258605 DYNLL1P2 dynein light chain LC8-type 1 pseudogene 2 3.0000 0.0000
7 ENSG00000259502 protein kinase C, eta (PRKCH) pseudogene 3.0000 0.0000
8 ENSG00000259648 high mobility group box 1 (HMGB1) pseudogene 3.0000 0.0000
9 ENSG00000271185 novel transcript 3.0000 0.0000
63119 ENSG00000101544 ADNP2 ADNP homeobox 2 -2.1483 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000271911 novel transcript -2.1512 0.0000
63127 ENSG00000267783 novel transcript, antisense to ASF1B -2.1510 0.0000
63126 ENSG00000250857 TRIM60P15 tripartite motif containing 60 pseudogene 15 -2.1510 0.1567
63125 ENSG00000148730 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -2.1510 0.0000
63124 ENSG00000011007 ELOA elongin A -2.1510 0.0000
63123 ENSG00000204967 PCDHA4 protocadherin alpha 4 -2.1508 0.0000
63122 ENSG00000181004 BBS12 Bardet-Biedl syndrome 12 -2.1505 0.0000
63121 ENSG00000267629 novel transcript, readthrough between TM6SF2 and HAPLN4 -2.1491 0.0000
63120 ENSG00000269752 novel transcript, antisense UNC13A -2.1488 0.0000
63119 ENSG00000101544 ADNP2 ADNP homeobox 2 -2.1483 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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