Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773651
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773651
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M278
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000235001
EIF4A1P2
eukaryotic translation initiation factor 4A1 pseudogene 2
2.0172
0.0000
2
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
1.8919
0.0000
3
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
1.7646
0.0000
4
ENSG00000274559
novel histone H2B family protein
1.5850
0.0003
5
ENSG00000284135
MIR3654
microRNA 3654
1.4736
0.0000
6
ENSG00000253676
TAGLN2P1
transgelin 2 pseudogene 1
1.4391
0.0000
7
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
1.3566
0.0000
8
ENSG00000214182
PTMAP5
prothymosin alpha pseudogene 5
1.2074
0.0000
9
ENSG00000206950
Y RNA
1.1705
0.0000
10
ENSG00000229927
RHEBP1
RHEB pseudogene 1
1.1536
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000267493
CIRBP-AS1
CIRBP antisense RNA 1
-2.1303
0.0000
63127
ENSG00000107187
LHX3
LIM homeobox 3
-2.1301
0.0000
63126
ENSG00000265766
CXADRP3
CXADR pseudogene 3
-2.1299
0.0000
63125
ENSG00000279409
TEC
-2.1296
0.0000
63124
ENSG00000156206
CFAP161
cilia and flagella associated protein 161
-2.1292
0.0000
63123
ENSG00000258285
TESC-AS1
TESC antisense RNA 1 (head to head)
-2.1289
0.0000
63122
ENSG00000274066
MIR6514
microRNA 6514
-2.1287
0.0000
63121
ENSG00000160957
RECQL4
RecQ like helicase 4
-2.1286
0.0000
63120
ENSG00000256463
SALL3
spalt like transcription factor 3
-2.1285
0.0000
63119
ENSG00000204860
FAM201A
family with sequence similarity 201 member A
-2.1283
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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