SHOGoiN Cell Methylome: GSM2773651
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773651 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M278 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000235001 | EIF4A1P2 | eukaryotic translation initiation factor 4A1 pseudogene 2 | 2.0172 | 0.0000 |
| 2 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 1.8919 | 0.0000 | |
| 3 | ENSG00000228519 | RAN binding protein 1 pseudogene | 1.7646 | 0.0000 | |
| 4 | ENSG00000274559 | histone H2B type F-S-like | 1.5850 | 0.0003 | |
| 5 | ENSG00000284135 | MIR3654 | microRNA 3654 | 1.4736 | 0.0000 |
| 6 | ENSG00000253676 | TAGLN2P1 | transgelin 2 pseudogene 1 | 1.4391 | 0.0000 |
| 7 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 1.3566 | 0.0000 |
| 8 | ENSG00000214182 | PTMAP5 | prothymosin alpha pseudogene 5 | 1.2074 | 0.0000 |
| 9 | ENSG00000206950 | NA | 1.1705 | 0.0000 | |
| 10 | ENSG00000229927 | RHEBP1 | RHEB pseudogene 1 | 1.1536 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000253027 | NA | -2.1859 | 0.0000 | |
| 63340 | ENSG00000139211 | AMIGO2 | adhesion molecule with Ig like domain 2 | -2.1857 | 0.0000 |
| 63339 | ENSG00000261790 | novel transcript | -2.1850 | 0.0000 | |
| 63338 | ENSG00000272902 | TBC1D8-AS1 | TBC1 domain family member 8 antisense RNA 1 | -2.1847 | 0.0000 |
| 63337 | ENSG00000227542 | novel transcript | -2.1846 | 0.0000 | |
| 63336 | ENSG00000236708 | novel transcript | -2.1845 | 0.0000 | |
| 63335 | ENSG00000213563 | C8orf82 | chromosome 8 open reading frame 82 | -2.1842 | 0.0000 |
| 63334 | ENSG00000246790 | novel transcript, antisense to SORL1 | -2.1839 | 0.0000 | |
| 63333 | ENSG00000122035 | RASL11A | RAS like family 11 member A | -2.1838 | 0.0000 |
| 63332 | ENSG00000257012 | lysine (K)-specific demethylase 4D (KDM4D) pseudogene | -2.1832 | 0.0000 |
