Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773651

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773651


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M278Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.0172 0.0000
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 1.8919 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 1.7646 0.0000
4 ENSG00000274559 novel histone H2B family protein 1.5850 0.0003
5 ENSG00000284135 MIR3654 microRNA 3654 1.4736 0.0000
6 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 1.4391 0.0000
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.3566 0.0000
8 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.2074 0.0000
9 ENSG00000206950 Y RNA 1.1705 0.0000
10 ENSG00000229927 RHEBP1 RHEB pseudogene 1 1.1536 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000267493 CIRBP-AS1 CIRBP antisense RNA 1 -2.1303 0.0000
63127 ENSG00000107187 LHX3 LIM homeobox 3 -2.1301 0.0000
63126 ENSG00000265766 CXADRP3 CXADR pseudogene 3 -2.1299 0.0000
63125 ENSG00000279409 TEC -2.1296 0.0000
63124 ENSG00000156206 CFAP161 cilia and flagella associated protein 161 -2.1292 0.0000
63123 ENSG00000258285 TESC-AS1 TESC antisense RNA 1 (head to head) -2.1289 0.0000
63122 ENSG00000274066 MIR6514 microRNA 6514 -2.1287 0.0000
63121 ENSG00000160957 RECQL4 RecQ like helicase 4 -2.1286 0.0000
63120 ENSG00000256463 SALL3 spalt like transcription factor 3 -2.1285 0.0000
63119 ENSG00000204860 FAM201A family with sequence similarity 201 member A -2.1283 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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