Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773651

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773651 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M278	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000235001	EIF4A1P2	eukaryotic translation initiation factor 4A1 pseudogene 2	2.0172	0.0000
2	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	1.8919	0.0000
3	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	1.7646	0.0000
4	ENSG00000274559		novel histone H2B family protein	1.5850	0.0003
5	ENSG00000284135	MIR3654	microRNA 3654	1.4736	0.0000
6	ENSG00000253676	TAGLN2P1	transgelin 2 pseudogene 1	1.4391	0.0000
7	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	1.3566	0.0000
8	ENSG00000214182	PTMAP5	prothymosin alpha pseudogene 5	1.2074	0.0000
9	ENSG00000206950		Y RNA	1.1705	0.0000
10	ENSG00000229927	RHEBP1	RHEB pseudogene 1	1.1536	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000267493	CIRBP-AS1	CIRBP antisense RNA 1	-2.1303	0.0000
63127	ENSG00000107187	LHX3	LIM homeobox 3	-2.1301	0.0000
63126	ENSG00000265766	CXADRP3	CXADR pseudogene 3	-2.1299	0.0000
63125	ENSG00000279409		TEC	-2.1296	0.0000
63124	ENSG00000156206	CFAP161	cilia and flagella associated protein 161	-2.1292	0.0000
63123	ENSG00000258285	TESC-AS1	TESC antisense RNA 1 (head to head)	-2.1289	0.0000
63122	ENSG00000274066	MIR6514	microRNA 6514	-2.1287	0.0000
63121	ENSG00000160957	RECQL4	RecQ like helicase 4	-2.1286	0.0000
63120	ENSG00000256463	SALL3	spalt like transcription factor 3	-2.1285	0.0000
63119	ENSG00000204860	FAM201A	family with sequence similarity 201 member A	-2.1283	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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