SHOGoiN Cell Methylome: GSM2773651

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773651


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M278Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.0172 0.0000
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 1.8919 0.0000
3 ENSG00000228519 RAN binding protein 1 pseudogene 1.7646 0.0000
4 ENSG00000274559 histone H2B type F-S-like 1.5850 0.0003
5 ENSG00000284135 MIR3654 microRNA 3654 1.4736 0.0000
6 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 1.4391 0.0000
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.3566 0.0000
8 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.2074 0.0000
9 ENSG00000206950 NA 1.1705 0.0000
10 ENSG00000229927 RHEBP1 RHEB pseudogene 1 1.1536 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253027 NA -2.1859 0.0000
63340 ENSG00000139211 AMIGO2 adhesion molecule with Ig like domain 2 -2.1857 0.0000
63339 ENSG00000261790 novel transcript -2.1850 0.0000
63338 ENSG00000272902 TBC1D8-AS1 TBC1 domain family member 8 antisense RNA 1 -2.1847 0.0000
63337 ENSG00000227542 novel transcript -2.1846 0.0000
63336 ENSG00000236708 novel transcript -2.1845 0.0000
63335 ENSG00000213563 C8orf82 chromosome 8 open reading frame 82 -2.1842 0.0000
63334 ENSG00000246790 novel transcript, antisense to SORL1 -2.1839 0.0000
63333 ENSG00000122035 RASL11A RAS like family 11 member A -2.1838 0.0000
63332 ENSG00000257012 lysine (K)-specific demethylase 4D (KDM4D) pseudogene -2.1832 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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