SHOGoiN Cell Methylome: GSM2773652

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773652


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M279Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.4233 0.0000
2 ENSG00000229927 RHEBP1 RHEB pseudogene 1 2.0829 0.0000
3 ENSG00000174384 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 2.0000 0.0000
4 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 1.7552 0.0000
5 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.7345 0.0000
6 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.6520 0.0000
7 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 1.5941 0.0000
8 ENSG00000205989 DEFB109C defensin beta 109C 1.5850 0.0167
9 ENSG00000212441 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene 1.5850 0.0167
10 ENSG00000264192 RN7SL117P RNA, 7SL, cytoplasmic 117, pseudogene 1.5850 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000102977 ACD ACD shelterin complex subunit and telomerase recruitment factor -2.0525 0.0000
63340 ENSG00000185737 NRG3 neuregulin 3 -2.0524 0.0000
63339 ENSG00000147027 TMEM47 transmembrane protein 47 -2.0519 0.0000
63338 ENSG00000112852 PCDHB2 protocadherin beta 2 -2.0516 0.0000
63337 ENSG00000200926 RNU6-960P RNA, U6 small nuclear 960, pseudogene -2.0515 0.0000
63336 ENSG00000167965 MLST8 MTOR associated protein, LST8 homolog -2.0512 0.0000
63335 ENSG00000273821 novel transcript -2.0509 0.0000
63334 ENSG00000069812 HES2 hes family bHLH transcription factor 2 -2.0508 0.0000
63333 ENSG00000127586 CHTF18 chromosome transmission fidelity factor 18 -2.0506 0.0000
63332 ENSG00000229782 novel transcript -2.0503 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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