Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773652
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773652
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M279
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.4233
0.0000
2
ENSG00000229927
RHEBP1
RHEB pseudogene 1
2.0829
0.0000
3
ENSG00000174384
PMS2P6
PMS1 homolog 2, mismatch repair system component pseudogene 6
2.0000
0.0000
4
ENSG00000259169
GNRHR2P1
GNRHR2 pseudogene 1
1.7552
0.0000
5
ENSG00000214182
PTMAP5
prothymosin alpha pseudogene 5
1.7345
0.0000
6
ENSG00000229638
RPL4P4
ribosomal protein L4 pseudogene 4
1.6520
0.0000
7
ENSG00000249353
NPM1P27
nucleophosmin 1 pseudogene 27
1.5941
0.0000
8
ENSG00000205989
DEFB109C
defensin beta 109C
1.5850
0.0167
9
ENSG00000212441
RNU6-1269P
RNA, U6 small nuclear 1269, pseudogene
1.5850
0.0167
10
ENSG00000264192
RN7SL117P
RNA, 7SL, cytoplasmic 117, pseudogene
1.5850
0.0003
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000200351
Y RNA
-2.0067
0.0000
63127
ENSG00000175229
GAL3ST3
galactose-3-O-sulfotransferase 3
-2.0067
0.0000
63126
ENSG00000271930
novel transcript
-2.0066
0.0000
63125
ENSG00000170638
TRABD
TraB domain containing
-2.0065
0.0000
63124
ENSG00000183186
C2CD4C
C2 calcium dependent domain containing 4C
-2.0063
0.0000
63123
ENSG00000135925
WNT10A
Wnt family member 10A
-2.0062
0.0000
63122
ENSG00000260464
novel transcript
-2.0059
0.0000
63121
ENSG00000255435
novel transcript, antisense to MLL and TTC36
-2.0059
0.0000
63120
ENSG00000263697
MIR3621
microRNA 3621
-2.0053
0.0000
63119
ENSG00000277945
novel transcript, sense intronic to HMGA2
-2.0049
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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