Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773652

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773652


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M279Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.4233 0.0000
2 ENSG00000229927 RHEBP1 RHEB pseudogene 1 2.0829 0.0000
3 ENSG00000174384 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 2.0000 0.0000
4 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 1.7552 0.0000
5 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.7345 0.0000
6 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.6520 0.0000
7 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 1.5941 0.0000
8 ENSG00000205989 DEFB109C defensin beta 109C 1.5850 0.0167
9 ENSG00000212441 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene 1.5850 0.0167
10 ENSG00000264192 RN7SL117P RNA, 7SL, cytoplasmic 117, pseudogene 1.5850 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000200351 Y RNA -2.0067 0.0000
63127 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.0067 0.0000
63126 ENSG00000271930 novel transcript -2.0066 0.0000
63125 ENSG00000170638 TRABD TraB domain containing -2.0065 0.0000
63124 ENSG00000183186 C2CD4C C2 calcium dependent domain containing 4C -2.0063 0.0000
63123 ENSG00000135925 WNT10A Wnt family member 10A -2.0062 0.0000
63122 ENSG00000260464 novel transcript -2.0059 0.0000
63121 ENSG00000255435 novel transcript, antisense to MLL and TTC36 -2.0059 0.0000
63120 ENSG00000263697 MIR3621 microRNA 3621 -2.0053 0.0000
63119 ENSG00000277945 novel transcript, sense intronic to HMGA2 -2.0049 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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