SHOGoiN Cell Methylome: GSM2773652
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773652 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M279 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.4233 | 0.0000 | |
| 2 | ENSG00000229927 | RHEBP1 | RHEB pseudogene 1 | 2.0829 | 0.0000 |
| 3 | ENSG00000174384 | PMS2P6 | PMS1 homolog 2, mismatch repair system component pseudogene 6 | 2.0000 | 0.0000 |
| 4 | ENSG00000259169 | GNRHR2P1 | GNRHR2 pseudogene 1 | 1.7552 | 0.0000 |
| 5 | ENSG00000214182 | PTMAP5 | prothymosin alpha pseudogene 5 | 1.7345 | 0.0000 |
| 6 | ENSG00000229638 | RPL4P4 | ribosomal protein L4 pseudogene 4 | 1.6520 | 0.0000 |
| 7 | ENSG00000249353 | NPM1P27 | nucleophosmin 1 pseudogene 27 | 1.5941 | 0.0000 |
| 8 | ENSG00000205989 | DEFB109C | defensin beta 109C | 1.5850 | 0.0167 |
| 9 | ENSG00000212441 | RNU6-1269P | RNA, U6 small nuclear 1269, pseudogene | 1.5850 | 0.0167 |
| 10 | ENSG00000264192 | RN7SL117P | RNA, 7SL, cytoplasmic 117, pseudogene | 1.5850 | 0.0003 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000102977 | ACD | ACD shelterin complex subunit and telomerase recruitment factor | -2.0525 | 0.0000 |
| 63340 | ENSG00000185737 | NRG3 | neuregulin 3 | -2.0524 | 0.0000 |
| 63339 | ENSG00000147027 | TMEM47 | transmembrane protein 47 | -2.0519 | 0.0000 |
| 63338 | ENSG00000112852 | PCDHB2 | protocadherin beta 2 | -2.0516 | 0.0000 |
| 63337 | ENSG00000200926 | RNU6-960P | RNA, U6 small nuclear 960, pseudogene | -2.0515 | 0.0000 |
| 63336 | ENSG00000167965 | MLST8 | MTOR associated protein, LST8 homolog | -2.0512 | 0.0000 |
| 63335 | ENSG00000273821 | novel transcript | -2.0509 | 0.0000 | |
| 63334 | ENSG00000069812 | HES2 | hes family bHLH transcription factor 2 | -2.0508 | 0.0000 |
| 63333 | ENSG00000127586 | CHTF18 | chromosome transmission fidelity factor 18 | -2.0506 | 0.0000 |
| 63332 | ENSG00000229782 | novel transcript | -2.0503 | 0.0000 |
