Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773652

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773652 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M279	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.4233	0.0000
2	ENSG00000229927	RHEBP1	RHEB pseudogene 1	2.0829	0.0000
3	ENSG00000174384	PMS2P6	PMS1 homolog 2, mismatch repair system component pseudogene 6	2.0000	0.0000
4	ENSG00000259169	GNRHR2P1	GNRHR2 pseudogene 1	1.7552	0.0000
5	ENSG00000214182	PTMAP5	prothymosin alpha pseudogene 5	1.7345	0.0000
6	ENSG00000229638	RPL4P4	ribosomal protein L4 pseudogene 4	1.6520	0.0000
7	ENSG00000249353	NPM1P27	nucleophosmin 1 pseudogene 27	1.5941	0.0000
8	ENSG00000205989	DEFB109C	defensin beta 109C	1.5850	0.0167
9	ENSG00000212441	RNU6-1269P	RNA, U6 small nuclear 1269, pseudogene	1.5850	0.0167
10	ENSG00000264192	RN7SL117P	RNA, 7SL, cytoplasmic 117, pseudogene	1.5850	0.0003

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000200351		Y RNA	-2.0067	0.0000
63127	ENSG00000175229	GAL3ST3	galactose-3-O-sulfotransferase 3	-2.0067	0.0000
63126	ENSG00000271930		novel transcript	-2.0066	0.0000
63125	ENSG00000170638	TRABD	TraB domain containing	-2.0065	0.0000
63124	ENSG00000183186	C2CD4C	C2 calcium dependent domain containing 4C	-2.0063	0.0000
63123	ENSG00000135925	WNT10A	Wnt family member 10A	-2.0062	0.0000
63122	ENSG00000260464		novel transcript	-2.0059	0.0000
63121	ENSG00000255435		novel transcript, antisense to MLL and TTC36	-2.0059	0.0000
63120	ENSG00000263697	MIR3621	microRNA 3621	-2.0053	0.0000
63119	ENSG00000277945		novel transcript, sense intronic to HMGA2	-2.0049	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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