Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773653

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773653


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M280Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.6530 0.0000
2 ENSG00000235735 RPL7AP72 ribosomal protein L7a pseudogene 72 2.5850 0.0000
3 ENSG00000242118 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene 2.5850 0.0001
4 ENSG00000231570 PPIAP63 peptidylprolyl isomerase A pseudogene 63 2.4037 0.0000
5 ENSG00000187871 GFRAL GDNF family receptor alpha like 2.3219 0.0000
6 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 2.3219 0.0004
7 ENSG00000236848 RPL23AP95 ribosomal protein L23a pseudogene 95 2.3219 0.0004
8 ENSG00000237089 PCNPP4 PEST containing nuclear protein pseudogene 4 2.3219 0.0000
9 ENSG00000243601 RPL12P24 ribosomal protein L12 pseudogene 24 2.3219 0.0000
10 ENSG00000274680 MYO5BP1 myosin VB pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000104332 SFRP1 secreted frizzled related protein 1 -2.3864 0.0000
63127 ENSG00000229771 novel transcript -2.3856 0.0000
63126 ENSG00000237477 novel transcript -2.3854 0.0000
63125 ENSG00000163377 TAFA4 TAFA chemokine like family member 4 -2.3854 0.0000
63124 ENSG00000184261 KCNK12 potassium two pore domain channel subfamily K member 12 -2.3849 0.0000
63123 ENSG00000279172 TEC -2.3840 0.0000
63122 ENSG00000257839 novel transcript, antisense to PHLDA1 -2.3839 0.0000
63121 ENSG00000255808 PDE2A-AS1 PDE2A antisense RNA 1 -2.3837 0.0000
63120 ENSG00000135047 CTSL cathepsin L -2.3832 0.0000
63119 ENSG00000177943 MAMDC4 MAM domain containing 4 -2.3829 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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