SHOGoiN Cell Methylome: GSM2773653

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773653


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M280Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.6530 0.0000
2 ENSG00000235735 RPL7AP72 ribosomal protein L7a pseudogene 72 2.5850 0.0000
3 ENSG00000242118 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene 2.5850 0.0001
4 ENSG00000231570 PPIAP63 peptidylprolyl isomerase A pseudogene 63 2.4037 0.0000
5 ENSG00000187871 GFRAL GDNF family receptor alpha like 2.3219 0.0000
6 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 2.3219 0.0004
7 ENSG00000236848 RPL23AP95 ribosomal protein L23a pseudogene 95 2.3219 0.0004
8 ENSG00000237089 PCNPP4 PEST containing nuclear protein pseudogene 4 2.3219 0.0000
9 ENSG00000243601 RPL12P24 ribosomal protein L12 pseudogene 24 2.3219 0.0000
10 ENSG00000274680 MYO5BP1 myosin VB pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000207573 MIR550A2 microRNA 550a-2 -2.4646 0.0000
63340 ENSG00000257520 surfactant associated 3 -2.4642 0.0000
63339 ENSG00000029993 HMGB3 high mobility group box 3 -2.4641 0.0000
63338 ENSG00000106236 NPTX2 neuronal pentraxin 2 -2.4638 0.0000
63337 ENSG00000255408 PCDHA3 protocadherin alpha 3 -2.4638 0.0000
63335 ENSG00000280334 TEC -2.4625 0.0000
63334 ENSG00000188582 PAQR9 progestin and adipoQ receptor family member 9 -2.4618 0.0000
63333 ENSG00000163082 SGPP2 sphingosine-1-phosphate phosphatase 2 -2.4617 0.0000
63332 ENSG00000089116 LHX5 LIM homeobox 5 -2.4613 0.0000
10 ENSG00000274680 MYO5BP1 myosin VB pseudogene 1 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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