SHOGoiN Cell Methylome: GSM2773654
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773654 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M281 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000201095 | RNU6-266P | RNA, U6 small nuclear 266, pseudogene | 3.4594 | 0.0000 |
| 2 | ENSG00000284135 | MIR3654 | microRNA 3654 | 3.1269 | 0.0000 |
| 3 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 3.0978 | 0.0000 | |
| 4 | ENSG00000253317 | novel transcript | 2.8074 | 0.0000 | |
| 5 | ENSG00000204250 | LINC00587 | long intergenic non-protein coding RNA 587 | 2.5850 | 0.0000 |
| 6 | ENSG00000219807 | ARF1P1 | ADP ribosylation factor 1 pseudogene 1 | 2.5850 | 0.0000 |
| 7 | ENSG00000234158 | RPEP2 | ribulose-5-phosphate-3-epimerase pseudogene 2 | 2.5850 | 0.0000 |
| 8 | ENSG00000249990 | MTCO2P24 | MT-CO2 pseudogene 24 | 2.5850 | 0.0000 |
| 9 | ENSG00000234782 | TPT1P9 | tumor protein, translationally-controlled 1 pseudogene 9 | 2.5452 | 0.0000 |
| 10 | ENSG00000213110 | ring finger protein 11 (RNF11) pseudogene | 2.4817 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000176510 | OR10AC1 | olfactory receptor family 10 subfamily AC member 1 (gene/pseudogene) | -2.4697 | 0.0000 |
| 63340 | ENSG00000115461 | IGFBP5 | insulin like growth factor binding protein 5 | -2.4692 | 0.0000 |
| 63339 | ENSG00000261759 | novel transcript, antisense to ITPRIPL2 | -2.4690 | 0.0000 | |
| 63338 | ENSG00000214534 | ZNF705E | zinc finger protein 705E | -2.4686 | 0.0000 |
| 63337 | ENSG00000264464 | novel transcript | -2.4685 | 0.0000 | |
| 63336 | ENSG00000164256 | PRDM9 | PR/SET domain 9 | -2.4685 | 0.0000 |
| 63335 | ENSG00000170791 | CHCHD7 | coiled-coil-helix-coiled-coil-helix domain containing 7 | -2.4684 | 0.0000 |
| 63334 | ENSG00000231963 | novel transcript | -2.4682 | 0.0000 | |
| 63333 | ENSG00000244399 | RN7SL251P | RNA, 7SL, cytoplasmic 251, pseudogene | -2.4682 | 0.0000 |
| 63332 | ENSG00000146070 | PLA2G7 | phospholipase A2 group VII | -2.4679 | 0.0000 |
