Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773654

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773654 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M281	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201095	RNU6-266P	RNA, U6 small nuclear 266, pseudogene	3.4594	0.0000
2	ENSG00000284135	MIR3654	microRNA 3654	3.1269	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	3.0978	0.0000
4	ENSG00000253317		novel transcript	2.8074	0.0000
5	ENSG00000204250	LINC00587	long intergenic non-protein coding RNA 587	2.5850	0.0000
6	ENSG00000219807	ARF1P1	ADP ribosylation factor 1 pseudogene 1	2.5850	0.0000
7	ENSG00000234158	RPEP2	ribulose-5-phosphate-3-epimerase pseudogene 2	2.5850	0.0000
8	ENSG00000249990	MTCO2P24	MT-CO2 pseudogene 24	2.5850	0.0000
9	ENSG00000234782	TPT1P9	tumor protein, translationally-controlled 1 pseudogene 9	2.5452	0.0000
10	ENSG00000213110	RNF11P1	ring finger protein 11 pseudogene 1	2.4817	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000187634	SAMD11	sterile alpha motif domain containing 11	-2.4181	0.0000
63172	ENSG00000171823	FBXL14	F-box and leucine rich repeat protein 14	-2.4180	0.0000
63171	ENSG00000207302		Y RNA	-2.4174	0.0000
63170	ENSG00000282375		novel transcript	-2.4173	0.0000
63169	ENSG00000029993	HMGB3	high mobility group box 3	-2.4171	0.0000
63168	ENSG00000153187	HNRNPU	heterogeneous nuclear ribonucleoprotein U	-2.4171	0.0000
63167	ENSG00000198743	SLC5A3	solute carrier family 5 member 3	-2.4169	0.0000
63166	ENSG00000196593	ANKRD20A19P	ankyrin repeat domain 20 family member A19, pseudogene	-2.4167	0.0000
63165	ENSG00000239367	RN7SL477P	RNA, 7SL, cytoplasmic 477, pseudogene	-2.4165	0.0000
63164	ENSG00000133739	LRRCC1	leucine rich repeat and coiled-coil centrosomal protein 1	-2.4160	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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