Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773654

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773654


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M281Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201095 RNU6-266P RNA, U6 small nuclear 266, pseudogene 3.4594 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 3.1269 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 3.0978 0.0000
4 ENSG00000253317 novel transcript 2.8074 0.0000
5 ENSG00000204250 LINC00587 long intergenic non-protein coding RNA 587 2.5850 0.0000
6 ENSG00000219807 ARF1P1 ADP ribosylation factor 1 pseudogene 1 2.5850 0.0000
7 ENSG00000234158 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 2.5850 0.0000
8 ENSG00000249990 MTCO2P24 MT-CO2 pseudogene 24 2.5850 0.0000
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.5452 0.0000
10 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 2.4817 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000187634 SAMD11 sterile alpha motif domain containing 11 -2.4181 0.0000
63172 ENSG00000171823 FBXL14 F-box and leucine rich repeat protein 14 -2.4180 0.0000
63171 ENSG00000207302 Y RNA -2.4174 0.0000
63170 ENSG00000282375 novel transcript -2.4173 0.0000
63169 ENSG00000029993 HMGB3 high mobility group box 3 -2.4171 0.0000
63168 ENSG00000153187 HNRNPU heterogeneous nuclear ribonucleoprotein U -2.4171 0.0000
63167 ENSG00000198743 SLC5A3 solute carrier family 5 member 3 -2.4169 0.0000
63166 ENSG00000196593 ANKRD20A19P ankyrin repeat domain 20 family member A19, pseudogene -2.4167 0.0000
63165 ENSG00000239367 RN7SL477P RNA, 7SL, cytoplasmic 477, pseudogene -2.4165 0.0000
63164 ENSG00000133739 LRRCC1 leucine rich repeat and coiled-coil centrosomal protein 1 -2.4160 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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