Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773654

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773654


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M281Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201095 RNU6-266P RNA, U6 small nuclear 266, pseudogene 3.4594 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 3.1269 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 3.0978 0.0000
4 ENSG00000253317 novel transcript 2.8074 0.0000
5 ENSG00000204250 LINC00587 long intergenic non-protein coding RNA 587 2.5850 0.0000
6 ENSG00000219807 ARF1P1 ADP ribosylation factor 1 pseudogene 1 2.5850 0.0000
7 ENSG00000234158 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 2.5850 0.0000
8 ENSG00000249990 MTCO2P24 MT-CO2 pseudogene 24 2.5850 0.0000
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.5452 0.0000
10 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 2.4817 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000283792 MIR4453 microRNA 4453 -2.4331 0.0000
63220 ENSG00000272057 novel transcript -2.4325 0.0000
63219 ENSG00000265683 SYPL1P2 synaptophysin like 1 pseudogene 2 -2.4323 0.0000
63218 ENSG00000272366 novel transcript -2.4322 0.0000
63217 ENSG00000143195 ILDR2 immunoglobulin like domain containing receptor 2 -2.4322 0.0000
63216 ENSG00000068912 ERLEC1 endoplasmic reticulum lectin 1 -2.4321 0.0080
63215 ENSG00000255026 novel transcript -2.4314 0.0000
63214 ENSG00000271551 novel transcript, antisense to ARID1B -2.4314 0.0000
63213 ENSG00000229980 TOB1-AS1 TOB1 antisense RNA 1 -2.4312 0.0000
63212 ENSG00000132341 RAN RAN, member RAS oncogene family -2.4310 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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