SHOGoiN Cell Methylome: GSM2773654

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773654


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M281Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201095 RNU6-266P RNA, U6 small nuclear 266, pseudogene 3.4594 0.0000
2 ENSG00000284135 MIR3654 microRNA 3654 3.1269 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 3.0978 0.0000
4 ENSG00000253317 novel transcript 2.8074 0.0000
5 ENSG00000204250 LINC00587 long intergenic non-protein coding RNA 587 2.5850 0.0000
6 ENSG00000219807 ARF1P1 ADP ribosylation factor 1 pseudogene 1 2.5850 0.0000
7 ENSG00000234158 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 2.5850 0.0000
8 ENSG00000249990 MTCO2P24 MT-CO2 pseudogene 24 2.5850 0.0000
9 ENSG00000234782 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 2.5452 0.0000
10 ENSG00000213110 ring finger protein 11 (RNF11) pseudogene 2.4817 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000176510 OR10AC1 olfactory receptor family 10 subfamily AC member 1 (gene/pseudogene) -2.4697 0.0000
63340 ENSG00000115461 IGFBP5 insulin like growth factor binding protein 5 -2.4692 0.0000
63339 ENSG00000261759 novel transcript, antisense to ITPRIPL2 -2.4690 0.0000
63338 ENSG00000214534 ZNF705E zinc finger protein 705E -2.4686 0.0000
63337 ENSG00000264464 novel transcript -2.4685 0.0000
63336 ENSG00000164256 PRDM9 PR/SET domain 9 -2.4685 0.0000
63335 ENSG00000170791 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 -2.4684 0.0000
63334 ENSG00000231963 novel transcript -2.4682 0.0000
63333 ENSG00000244399 RN7SL251P RNA, 7SL, cytoplasmic 251, pseudogene -2.4682 0.0000
63332 ENSG00000146070 PLA2G7 phospholipase A2 group VII -2.4679 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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