Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773654
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773654
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M281
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000201095
RNU6-266P
RNA, U6 small nuclear 266, pseudogene
3.4594
0.0000
2
ENSG00000284135
MIR3654
microRNA 3654
3.1269
0.0000
3
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
3.0978
0.0000
4
ENSG00000253317
novel transcript
2.8074
0.0000
5
ENSG00000204250
LINC00587
long intergenic non-protein coding RNA 587
2.5850
0.0000
6
ENSG00000219807
ARF1P1
ADP ribosylation factor 1 pseudogene 1
2.5850
0.0000
7
ENSG00000234158
RPEP2
ribulose-5-phosphate-3-epimerase pseudogene 2
2.5850
0.0000
8
ENSG00000249990
MTCO2P24
MT-CO2 pseudogene 24
2.5850
0.0000
9
ENSG00000234782
TPT1P9
tumor protein, translationally-controlled 1 pseudogene 9
2.5452
0.0000
10
ENSG00000213110
RNF11P1
ring finger protein 11 pseudogene 1
2.4817
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000187634
SAMD11
sterile alpha motif domain containing 11
-2.4181
0.0000
63172
ENSG00000171823
FBXL14
F-box and leucine rich repeat protein 14
-2.4180
0.0000
63171
ENSG00000207302
Y RNA
-2.4174
0.0000
63170
ENSG00000282375
novel transcript
-2.4173
0.0000
63169
ENSG00000029993
HMGB3
high mobility group box 3
-2.4171
0.0000
63168
ENSG00000153187
HNRNPU
heterogeneous nuclear ribonucleoprotein U
-2.4171
0.0000
63167
ENSG00000198743
SLC5A3
solute carrier family 5 member 3
-2.4169
0.0000
63166
ENSG00000196593
ANKRD20A19P
ankyrin repeat domain 20 family member A19, pseudogene
-2.4167
0.0000
63165
ENSG00000239367
RN7SL477P
RNA, 7SL, cytoplasmic 477, pseudogene
-2.4165
0.0000
63164
ENSG00000133739
LRRCC1
leucine rich repeat and coiled-coil centrosomal protein 1
-2.4160
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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