Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773654

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773654 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M281	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201095	RNU6-266P	RNA, U6 small nuclear 266, pseudogene	3.4594	0.0000
2	ENSG00000284135	MIR3654	microRNA 3654	3.1269	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	3.0978	0.0000
4	ENSG00000253317		novel transcript	2.8074	0.0000
5	ENSG00000204250	LINC00587	long intergenic non-protein coding RNA 587	2.5850	0.0000
6	ENSG00000219807	ARF1P1	ADP ribosylation factor 1 pseudogene 1	2.5850	0.0000
7	ENSG00000234158	RPEP2	ribulose-5-phosphate-3-epimerase pseudogene 2	2.5850	0.0000
8	ENSG00000249990	MTCO2P24	MT-CO2 pseudogene 24	2.5850	0.0000
9	ENSG00000234782	TPT1P9	tumor protein, translationally-controlled 1 pseudogene 9	2.5452	0.0000
10	ENSG00000213110	RNF11P1	ring finger protein 11 pseudogene 1	2.4817	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000283792	MIR4453	microRNA 4453	-2.4331	0.0000
63220	ENSG00000272057		novel transcript	-2.4325	0.0000
63219	ENSG00000265683	SYPL1P2	synaptophysin like 1 pseudogene 2	-2.4323	0.0000
63218	ENSG00000272366		novel transcript	-2.4322	0.0000
63217	ENSG00000143195	ILDR2	immunoglobulin like domain containing receptor 2	-2.4322	0.0000
63216	ENSG00000068912	ERLEC1	endoplasmic reticulum lectin 1	-2.4321	0.0080
63215	ENSG00000255026		novel transcript	-2.4314	0.0000
63214	ENSG00000271551		novel transcript, antisense to ARID1B	-2.4314	0.0000
63213	ENSG00000229980	TOB1-AS1	TOB1 antisense RNA 1	-2.4312	0.0000
63212	ENSG00000132341	RAN	RAN, member RAS oncogene family	-2.4310	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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