SHOGoiN Cell Methylome: GSM2773655
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773655 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M282 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000251051 | ELL2P2 | elongation factor for RNA polymerase II 2 pseudogene 2 | 3.0112 | 0.0000 |
| 2 | ENSG00000264232 | LINC01916 | long intergenic non-protein coding RNA 1916 | 3.0000 | 0.0000 |
| 3 | ENSG00000275810 | MIR8082 | microRNA 8082 | 2.9282 | 0.0000 |
| 4 | ENSG00000214903 | RPS15AP3 | ribosomal protein S15a pseudogene 3 | 2.8074 | 0.0000 |
| 5 | ENSG00000232728 | PHB2P1 | prohibitin 2 pseudogene 1 | 2.8074 | 0.0000 |
| 6 | ENSG00000251489 | solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene | 2.8074 | 0.0000 | |
| 7 | ENSG00000259133 | novel transcript, antisense to TMEM260 | 2.8074 | 0.0000 | |
| 8 | ENSG00000251529 | pseudogene similar to part of UDP glucuronosyltransferase 2 family protein | 2.7925 | 0.0000 | |
| 9 | ENSG00000270683 | FAM71BP1 | family with sequence similarity 71 member B pseudogene 1 | 2.6667 | 0.0000 |
| 10 | ENSG00000138472 | GUCA1C | guanylate cyclase activator 1C | 2.5850 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000223393 | novel transcript | -2.5638 | 0.0000 | |
| 63340 | ENSG00000231248 | FAM242D | family with sequence similarity 242 member D | -2.5631 | 0.0000 |
| 63339 | ENSG00000253720 | novel transcript | -2.5630 | 0.0000 | |
| 63338 | ENSG00000258643 | BCL2L2-PABPN1 | BCL2L2-PABPN1 readthrough | -2.5627 | 0.0000 |
| 63337 | ENSG00000054148 | PHPT1 | phosphohistidine phosphatase 1 | -2.5621 | 0.0000 |
| 63336 | ENSG00000143632 | ACTA1 | actin alpha 1, skeletal muscle | -2.5616 | 0.0000 |
| 63335 | ENSG00000267695 | novel transcript | -2.5610 | 0.0000 | |
| 63334 | ENSG00000175874 | CREG2 | cellular repressor of E1A stimulated genes 2 | -2.5606 | 0.0000 |
| 63333 | ENSG00000264745 | TTC39C-AS1 | TTC39C antisense RNA 1 | -2.5602 | 0.0000 |
| 63332 | ENSG00000155093 | PTPRN2 | protein tyrosine phosphatase receptor type N2 | -2.5601 | 0.0000 |
