Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773655

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773655 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M282	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000251051	ELL2P2	elongation factor for RNA polymerase II 2 pseudogene 2	3.0112	0.0000
2	ENSG00000264232	LINC01916	long intergenic non-protein coding RNA 1916	3.0000	0.0000
3	ENSG00000275810	MIR8082	microRNA 8082	2.9282	0.0000
4	ENSG00000214903	RPS15AP3	ribosomal protein S15a pseudogene 3	2.8074	0.0000
5	ENSG00000232728	PHB2P1	prohibitin 2 pseudogene 1	2.8074	0.0000
6	ENSG00000251489		solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene	2.8074	0.0000
7	ENSG00000259133		novel transcript, antisense to TMEM260	2.8074	0.0000
8	ENSG00000251529		pseudogene similar to part of UDP glucuronosyltransferase 2 family protein	2.7925	0.0000
9	ENSG00000270683	FAM71BP1	family with sequence similarity 71 member B pseudogene 1	2.6667	0.0000
10	ENSG00000138472	GUCA1C	guanylate cyclase activator 1C	2.5850	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000283698	VINAC1P	vinculin/alpha-catenin family member 1, pseudogene	-2.4911	0.0000
63127	ENSG00000182831	C16orf72	chromosome 16 open reading frame 72	-2.4910	0.0000
63126	ENSG00000200534	SNORA33	small nucleolar RNA, H/ACA box 33	-2.4908	0.0000
63125	ENSG00000260041		novel transcript	-2.4908	0.0000
63124	ENSG00000273175		novel transcript	-2.4907	0.0000
63123	ENSG00000272104		novel protein	-2.4901	0.0000
63122	ENSG00000183814	LIN9	lin-9 DREAM MuvB core complex component	-2.4901	0.0000
63121	ENSG00000130675	MNX1	motor neuron and pancreas homeobox 1	-2.4899	0.0000
63120	ENSG00000118231	CRYGD	crystallin gamma D	-2.4899	0.0000
63119	ENSG00000128578	STRIP2	striatin interacting protein 2	-2.4894	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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