Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773655
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773655
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M282
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000251051
ELL2P2
elongation factor for RNA polymerase II 2 pseudogene 2
3.0112
0.0000
2
ENSG00000264232
LINC01916
long intergenic non-protein coding RNA 1916
3.0000
0.0000
3
ENSG00000275810
MIR8082
microRNA 8082
2.9282
0.0000
4
ENSG00000214903
RPS15AP3
ribosomal protein S15a pseudogene 3
2.8074
0.0000
5
ENSG00000232728
PHB2P1
prohibitin 2 pseudogene 1
2.8074
0.0000
6
ENSG00000251489
solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene
2.8074
0.0000
7
ENSG00000259133
novel transcript, antisense to TMEM260
2.8074
0.0000
8
ENSG00000251529
pseudogene similar to part of UDP glucuronosyltransferase 2 family protein
2.7925
0.0000
9
ENSG00000270683
FAM71BP1
family with sequence similarity 71 member B pseudogene 1
2.6667
0.0000
10
ENSG00000138472
GUCA1C
guanylate cyclase activator 1C
2.5850
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000283698
VINAC1P
vinculin/alpha-catenin family member 1, pseudogene
-2.4911
0.0000
63127
ENSG00000182831
C16orf72
chromosome 16 open reading frame 72
-2.4910
0.0000
63126
ENSG00000200534
SNORA33
small nucleolar RNA, H/ACA box 33
-2.4908
0.0000
63125
ENSG00000260041
novel transcript
-2.4908
0.0000
63124
ENSG00000273175
novel transcript
-2.4907
0.0000
63123
ENSG00000272104
novel protein
-2.4901
0.0000
63122
ENSG00000183814
LIN9
lin-9 DREAM MuvB core complex component
-2.4901
0.0000
63121
ENSG00000130675
MNX1
motor neuron and pancreas homeobox 1
-2.4899
0.0000
63120
ENSG00000118231
CRYGD
crystallin gamma D
-2.4899
0.0000
63119
ENSG00000128578
STRIP2
striatin interacting protein 2
-2.4894
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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