SHOGoiN Cell Methylome: GSM2773655

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773655


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M282Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251051 ELL2P2 elongation factor for RNA polymerase II 2 pseudogene 2 3.0112 0.0000
2 ENSG00000264232 LINC01916 long intergenic non-protein coding RNA 1916 3.0000 0.0000
3 ENSG00000275810 MIR8082 microRNA 8082 2.9282 0.0000
4 ENSG00000214903 RPS15AP3 ribosomal protein S15a pseudogene 3 2.8074 0.0000
5 ENSG00000232728 PHB2P1 prohibitin 2 pseudogene 1 2.8074 0.0000
6 ENSG00000251489 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene 2.8074 0.0000
7 ENSG00000259133 novel transcript, antisense to TMEM260 2.8074 0.0000
8 ENSG00000251529 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.7925 0.0000
9 ENSG00000270683 FAM71BP1 family with sequence similarity 71 member B pseudogene 1 2.6667 0.0000
10 ENSG00000138472 GUCA1C guanylate cyclase activator 1C 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000223393 novel transcript -2.5638 0.0000
63340 ENSG00000231248 FAM242D family with sequence similarity 242 member D -2.5631 0.0000
63339 ENSG00000253720 novel transcript -2.5630 0.0000
63338 ENSG00000258643 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough -2.5627 0.0000
63337 ENSG00000054148 PHPT1 phosphohistidine phosphatase 1 -2.5621 0.0000
63336 ENSG00000143632 ACTA1 actin alpha 1, skeletal muscle -2.5616 0.0000
63335 ENSG00000267695 novel transcript -2.5610 0.0000
63334 ENSG00000175874 CREG2 cellular repressor of E1A stimulated genes 2 -2.5606 0.0000
63333 ENSG00000264745 TTC39C-AS1 TTC39C antisense RNA 1 -2.5602 0.0000
63332 ENSG00000155093 PTPRN2 protein tyrosine phosphatase receptor type N2 -2.5601 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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