Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773656

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773656 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M283	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000284135	MIR3654	microRNA 3654	2.4020	0.0000
2	ENSG00000228519		RAN binding protein 1 pseudogene	2.2916	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.1647	0.0000
4	ENSG00000221190	MIR1184-2	microRNA 1184-2	2.0000	0.0037
5	ENSG00000254923		deubiquitinating enzyme 3 pseudogene	2.0000	0.0000
6	ENSG00000274791	F8A2	coagulation factor VIII associated 2	2.0000	0.0037
7	ENSG00000277858	H2AB2	H2A.B variant histone 2	2.0000	0.0037
8	ENSG00000254804		novel transcript	1.9534	0.0000
9	ENSG00000255084		novel transcript	1.7925	0.0001
10	ENSG00000252903	RNU6-894P	RNA, U6 small nuclear 894, pseudogene	1.7143	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63221	ENSG00000250662	HNRNPKP5	heterogeneous nuclear ribonucleoprotein K pseudogene 5	-1.9005	0.0000
63220	ENSG00000186212	SOWAHB	sosondowah ankyrin repeat domain family member B	-1.9001	0.0000
63219	ENSG00000259330	INAFM2	InaF motif containing 2	-1.8997	0.0000
63218	ENSG00000267441		CMT1A duplicated region transcript 15-like 2 (CDRT15L2) pseudogene	-1.8996	0.0000
63217	ENSG00000248514		novel transcript	-1.8996	0.0000
63216	ENSG00000241211	IQCJ-SCHIP1-AS1	IQCJ-SCHIP1 readthrough antisense RNA 1	-1.8990	0.0000
63215	ENSG00000176884	GRIN1	glutamate ionotropic receptor NMDA type subunit 1	-1.8981	0.0000
63214	ENSG00000248367		novel transcript	-1.8976	0.0000
63213	ENSG00000107807	TLX1	T cell leukemia homeobox 1	-1.8976	0.0000
63212	ENSG00000259685	IDH2-DT	IDH2 divergent transcript	-1.8972	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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