SHOGoiN Cell Methylome: GSM2773656
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773656 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M283 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000284135 | MIR3654 | microRNA 3654 | 2.4020 | 0.0000 |
| 2 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.2916 | 0.0000 | |
| 3 | ENSG00000283041 | eukaryotic translation elongation factor 1 gamma ( | 2.1647 | 0.0000 | |
| 4 | ENSG00000221190 | MIR1184-2 | microRNA 1184-2 | 2.0000 | 0.0037 |
| 5 | ENSG00000254923 | deubiquitinating enzyme 3 pseudogene | 2.0000 | 0.0000 | |
| 6 | ENSG00000274791 | F8A2 | coagulation factor VIII associated 2 | 2.0000 | 0.0037 |
| 7 | ENSG00000277858 | H2AFB2 | H2A histone family member B2 | 2.0000 | 0.0037 |
| 8 | ENSG00000254804 | novel transcript | 1.9534 | 0.0000 | |
| 9 | ENSG00000255084 | novel transcript | 1.7925 | 0.0001 | |
| 10 | ENSG00000252903 | RNU6-894P | RNA, U6 small nuclear 894, pseudogene | 1.7143 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000271880 | AGAP11 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 11 | -1.9320 | 0.0000 |
| 63340 | ENSG00000252714 | RNA5SP392 | RNA, 5S ribosomal pseudogene 392 | -1.9318 | 0.0000 |
| 63339 | ENSG00000226164 | FGFR3P6 | fibroblast growth factor receptor 3 pseudogene 6 | -1.9317 | 0.0000 |
| 63338 | ENSG00000241527 | CA15P1 | CA15 pseudogene 1 | -1.9314 | 0.0000 |
| 63337 | ENSG00000182983 | ZNF662 | zinc finger protein 662 | -1.9310 | 0.0000 |
| 63336 | ENSG00000181915 | ADO | 2-aminoethanethiol dioxygenase | -1.9309 | 0.0000 |
| 63335 | ENSG00000283663 | novel transcript | -1.9305 | 0.0000 | |
| 63334 | ENSG00000168887 | C2orf68 | chromosome 2 open reading frame 68 | -1.9305 | 0.0000 |
| 63333 | ENSG00000186994 | KANK3 | KN motif and ankyrin repeat domains 3 | -1.9297 | 0.0000 |
| 63332 | ENSG00000231977 | novel transcript | -1.9295 | 0.0000 |
