SHOGoiN Cell Methylome: GSM2773656

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773656


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M283Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000284135 MIR3654 microRNA 3654 2.4020 0.0000
2 ENSG00000228519 RAN binding protein 1 pseudogene 2.2916 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1647 0.0000
4 ENSG00000221190 MIR1184-2 microRNA 1184-2 2.0000 0.0037
5 ENSG00000254923 deubiquitinating enzyme 3 pseudogene 2.0000 0.0000
6 ENSG00000274791 F8A2 coagulation factor VIII associated 2 2.0000 0.0037
7 ENSG00000277858 H2AFB2 H2A histone family member B2 2.0000 0.0037
8 ENSG00000254804 novel transcript 1.9534 0.0000
9 ENSG00000255084 novel transcript 1.7925 0.0001
10 ENSG00000252903 RNU6-894P RNA, U6 small nuclear 894, pseudogene 1.7143 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000271880 AGAP11 ArfGAP with GTPase domain, ankyrin repeat and PH domain 11 -1.9320 0.0000
63340 ENSG00000252714 RNA5SP392 RNA, 5S ribosomal pseudogene 392 -1.9318 0.0000
63339 ENSG00000226164 FGFR3P6 fibroblast growth factor receptor 3 pseudogene 6 -1.9317 0.0000
63338 ENSG00000241527 CA15P1 CA15 pseudogene 1 -1.9314 0.0000
63337 ENSG00000182983 ZNF662 zinc finger protein 662 -1.9310 0.0000
63336 ENSG00000181915 ADO 2-aminoethanethiol dioxygenase -1.9309 0.0000
63335 ENSG00000283663 novel transcript -1.9305 0.0000
63334 ENSG00000168887 C2orf68 chromosome 2 open reading frame 68 -1.9305 0.0000
63333 ENSG00000186994 KANK3 KN motif and ankyrin repeat domains 3 -1.9297 0.0000
63332 ENSG00000231977 novel transcript -1.9295 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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