Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773656

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773656


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M283Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000284135 MIR3654 microRNA 3654 2.4020 0.0000
2 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.2916 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1647 0.0000
4 ENSG00000221190 MIR1184-2 microRNA 1184-2 2.0000 0.0037
5 ENSG00000254923 deubiquitinating enzyme 3 pseudogene 2.0000 0.0000
6 ENSG00000274791 F8A2 coagulation factor VIII associated 2 2.0000 0.0037
7 ENSG00000277858 H2AB2 H2A.B variant histone 2 2.0000 0.0037
8 ENSG00000254804 novel transcript 1.9534 0.0000
9 ENSG00000255084 novel transcript 1.7925 0.0001
10 ENSG00000252903 RNU6-894P RNA, U6 small nuclear 894, pseudogene 1.7143 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000166165 CKB creatine kinase B -1.8877 0.0000
63172 ENSG00000151650 VENTX VENT homeobox -1.8875 0.0000
63171 ENSG00000267493 CIRBP-AS1 CIRBP antisense RNA 1 -1.8875 0.0000
63170 ENSG00000184292 TACSTD2 tumor associated calcium signal transducer 2 -1.8868 0.0000
63169 ENSG00000104529 EEF1D eukaryotic translation elongation factor 1 delta -1.8868 0.0000
63168 ENSG00000082175 PGR progesterone receptor -1.8868 0.0000
63167 ENSG00000270889 PPP1R14BP4 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4 -1.8867 0.0000
63166 ENSG00000204044 SLC12A5-AS1 SLC12A5 and MMP9 antisense RNA 1 -1.8867 0.0000
63165 ENSG00000284258 MIR8085 microRNA 8085 -1.8866 0.0000
63164 ENSG00000227542 novel transcript -1.8858 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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