Human Omics database for
the Generation of iPS and Normal Cells
Release notes
Statistics
Document manuals
FAQ
All Modules
Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773656
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773656
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M283
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000284135
MIR3654
microRNA 3654
2.4020
0.0000
2
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.2916
0.0000
3
ENSG00000283041
eukaryotic translation elongation factor 1 gamma (
2.1647
0.0000
4
ENSG00000221190
MIR1184-2
microRNA 1184-2
2.0000
0.0037
5
ENSG00000254923
deubiquitinating enzyme 3 pseudogene
2.0000
0.0000
6
ENSG00000274791
F8A2
coagulation factor VIII associated 2
2.0000
0.0037
7
ENSG00000277858
H2AB2
H2A.B variant histone 2
2.0000
0.0037
8
ENSG00000254804
novel transcript
1.9534
0.0000
9
ENSG00000255084
novel transcript
1.7925
0.0001
10
ENSG00000252903
RNU6-894P
RNA, U6 small nuclear 894, pseudogene
1.7143
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63173
ENSG00000166165
CKB
creatine kinase B
-1.8877
0.0000
63172
ENSG00000151650
VENTX
VENT homeobox
-1.8875
0.0000
63171
ENSG00000267493
CIRBP-AS1
CIRBP antisense RNA 1
-1.8875
0.0000
63170
ENSG00000184292
TACSTD2
tumor associated calcium signal transducer 2
-1.8868
0.0000
63169
ENSG00000104529
EEF1D
eukaryotic translation elongation factor 1 delta
-1.8868
0.0000
63168
ENSG00000082175
PGR
progesterone receptor
-1.8868
0.0000
63167
ENSG00000270889
PPP1R14BP4
protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4
-1.8867
0.0000
63166
ENSG00000204044
SLC12A5-AS1
SLC12A5 and MMP9 antisense RNA 1
-1.8867
0.0000
63165
ENSG00000284258
MIR8085
microRNA 8085
-1.8866
0.0000
63164
ENSG00000227542
novel transcript
-1.8858
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
download
Now loading...