Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773656

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773656 Profile download	7020001000000000000000-715	Sequence Read Archive	SRP074598	SRP074598_M283	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	ICM	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000284135	MIR3654	microRNA 3654	2.4020	0.0000
2	ENSG00000228519	RANBP1P1	RANBP1 pseudogene 1	2.2916	0.0000
3	ENSG00000283041		eukaryotic translation elongation factor 1 gamma (	2.1647	0.0000
4	ENSG00000221190	MIR1184-2	microRNA 1184-2	2.0000	0.0037
5	ENSG00000254923		deubiquitinating enzyme 3 pseudogene	2.0000	0.0000
6	ENSG00000274791	F8A2	coagulation factor VIII associated 2	2.0000	0.0037
7	ENSG00000277858	H2AB2	H2A.B variant histone 2	2.0000	0.0037
8	ENSG00000254804		novel transcript	1.9534	0.0000
9	ENSG00000255084		novel transcript	1.7925	0.0001
10	ENSG00000252903	RNU6-894P	RNA, U6 small nuclear 894, pseudogene	1.7143	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63173	ENSG00000166165	CKB	creatine kinase B	-1.8877	0.0000
63172	ENSG00000151650	VENTX	VENT homeobox	-1.8875	0.0000
63171	ENSG00000267493	CIRBP-AS1	CIRBP antisense RNA 1	-1.8875	0.0000
63170	ENSG00000184292	TACSTD2	tumor associated calcium signal transducer 2	-1.8868	0.0000
63169	ENSG00000104529	EEF1D	eukaryotic translation elongation factor 1 delta	-1.8868	0.0000
63168	ENSG00000082175	PGR	progesterone receptor	-1.8868	0.0000
63167	ENSG00000270889	PPP1R14BP4	protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4	-1.8867	0.0000
63166	ENSG00000204044	SLC12A5-AS1	SLC12A5 and MMP9 antisense RNA 1	-1.8867	0.0000
63165	ENSG00000284258	MIR8085	microRNA 8085	-1.8866	0.0000
63164	ENSG00000227542		novel transcript	-1.8858	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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