Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773656

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773656


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M283Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000284135 MIR3654 microRNA 3654 2.4020 0.0000
2 ENSG00000228519 RAN binding protein 1 pseudogene 2.2916 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1647 0.0000
4 ENSG00000221190 MIR1184-2 microRNA 1184-2 2.0000 0.0037
5 ENSG00000254923 deubiquitinating enzyme 3 pseudogene 2.0000 0.0000
6 ENSG00000274791 F8A2 coagulation factor VIII associated 2 2.0000 0.0037
7 ENSG00000277858 H2AB2 H2A.B variant histone 2 2.0000 0.0037
8 ENSG00000254804 novel transcript 1.9534 0.0000
9 ENSG00000255084 novel transcript 1.7925 0.0001
10 ENSG00000252903 RNU6-894P RNA, U6 small nuclear 894, pseudogene 1.7143 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000250662 HNRNPKP5 heterogeneous nuclear ribonucleoprotein K pseudogene 5 -1.9005 0.0000
63220 ENSG00000186212 SOWAHB sosondowah ankyrin repeat domain family member B -1.9001 0.0000
63219 ENSG00000259330 INAFM2 InaF motif containing 2 -1.8997 0.0000
63218 ENSG00000267441 CMT1A duplicated region transcript 15-like 2 (CDRT15L2) pseudogene -1.8996 0.0000
63217 ENSG00000248514 novel transcript -1.8996 0.0000
63216 ENSG00000241211 IQCJ-SCHIP1-AS1 IQCJ-SCHIP1 readthrough antisense RNA 1 -1.8990 0.0000
63215 ENSG00000176884 GRIN1 glutamate ionotropic receptor NMDA type subunit 1 -1.8981 0.0000
63214 ENSG00000248367 novel transcript -1.8976 0.0000
63213 ENSG00000107807 TLX1 T cell leukemia homeobox 1 -1.8976 0.0000
63212 ENSG00000259685 IDH2-DT IDH2 divergent transcript -1.8972 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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