SHOGoiN Cell Methylome: GSM2773657

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773657


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M284Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228519 RAN binding protein 1 pseudogene 2.5200 0.0000
2 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0597 0.0000
3 ENSG00000232472 EEF1B2P3 eukaryotic translation elongation factor 1 beta 2 pseudogene 3 1.8371 0.0000
4 ENSG00000225466 OFD1P10Y OFD1 pseudogene 10 Y-linked 1.7925 0.0001
5 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 1.5850 0.0213
6 ENSG00000225740 ELOCP6 elongin C pseudogene 6 1.5850 0.0213
7 ENSG00000229521 MYCBP2-AS2 MYCBP2 antisense RNA 2 1.5850 0.0005
8 ENSG00000229600 novel transcript 1.5850 0.0213
9 ENSG00000229709 USP9YP36 USP9Y pseudogene 36 1.5850 0.0005
10 ENSG00000238489 RNU6-749P RNA, U6 small nuclear 749, pseudogene 1.5850 0.0213

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000166126 AMN amnion associated transmembrane protein -2.0603 0.0000
63340 ENSG00000170293 CMTM8 CKLF like MARVEL transmembrane domain containing 8 -2.0601 0.0000
63339 ENSG00000248383 PCDHAC1 protocadherin alpha subfamily C, 1 -2.0595 0.0000
63338 ENSG00000275836 MIR6068 microRNA 6068 -2.0590 0.0000
63337 ENSG00000277671 NA -2.0590 0.0000
63336 ENSG00000177917 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 -2.0588 0.0000
63335 ENSG00000213563 C8orf82 chromosome 8 open reading frame 82 -2.0582 0.0000
63334 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 -2.0576 0.0000
63333 ENSG00000165566 AMER2 APC membrane recruitment protein 2 -2.0576 0.0000
63332 ENSG00000238387 NA -2.0575 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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