Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773657

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773657


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M284Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.5200 0.0000
2 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0597 0.0000
3 ENSG00000232472 EEF1B2P3 eukaryotic translation elongation factor 1 beta 2 pseudogene 3 1.8371 0.0000
4 ENSG00000225466 OFD1P10Y OFD1 pseudogene 10 Y-linked 1.7925 0.0001
5 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 1.5850 0.0213
6 ENSG00000225740 ELOCP6 elongin C pseudogene 6 1.5850 0.0213
7 ENSG00000229521 MYCBP2-AS2 MYCBP2 antisense RNA 2 1.5850 0.0005
8 ENSG00000229600 novel transcript 1.5850 0.0213
9 ENSG00000229709 USP9YP36 USP9Y pseudogene 36 1.5850 0.0005
10 ENSG00000238489 RNU6-749P RNA, U6 small nuclear 749, pseudogene 1.5850 0.0213

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000215343 ZNF705D zinc finger protein 705D -2.0000 1.0000
63127 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -1.9996 0.0000
63126 ENSG00000252224 RNU4ATAC15P RNA, U4atac small nuclear 15, pseudogene -1.9995 0.0000
63125 ENSG00000257012 lysine (K)-specific demethylase 4D (KDM4D) pseudogene -1.9994 0.0000
63124 ENSG00000279172 TEC -1.9990 0.0000
63123 ENSG00000283959 novel transcript -1.9989 0.0000
63122 ENSG00000228264 PSMD8P1 proteasome 26S subunit, non-ATPase, 8 pseudogene 1 -1.9985 0.0000
63121 ENSG00000265422 MIR4684 microRNA 4684 -1.9983 0.0000
63120 ENSG00000253884 chromosome 9 open reading frame 122 (C9orf122) pseudogene -1.9983 0.0000
63119 ENSG00000188626 GOLGA8M golgin A8 family member M -1.9982 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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