Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773658

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773658


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M285Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212187 NA 2.8074 0.0000
2 ENSG00000270759 OOEPP1 OOEP pseudogene 1 2.7416 0.0000
3 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 2.5850 0.0002
4 ENSG00000207632 MIR588 microRNA 588 2.5850 0.0002
5 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.5204 0.0000
6 ENSG00000186943 OR13C8 olfactory receptor family 13 subfamily C member 8 2.5192 0.0000
7 ENSG00000251735 NA 2.3949 0.0000
8 ENSG00000212321 Small nucleolar RNA U3 2.3219 0.0011
9 ENSG00000231388 FMN2P1 FMN2 pseudogene 1 2.3219 0.0011
10 ENSG00000239205 LINC02023 long intergenic non-protein coding RNA 2023 2.3219 0.0011

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000253405 EVX1-AS EVX1 antisense RNA -2.1371 0.0000
63127 ENSG00000272192 PDE7A-DT PDE7A divergent transcript -2.1368 0.0000
63126 ENSG00000113384 GOLPH3 golgi phosphoprotein 3 -2.1365 0.0000
63125 ENSG00000236471 novel transcript -2.1363 0.0000
63124 ENSG00000107562 CXCL12 C-X-C motif chemokine ligand 12 -2.1359 0.0000
63123 ENSG00000182759 MAFA MAF bZIP transcription factor A -2.1358 0.0000
63122 ENSG00000119655 NPC2 NPC intracellular cholesterol transporter 2 -2.1358 0.0000
63121 ENSG00000178035 IMPDH2 inosine monophosphate dehydrogenase 2 -2.1357 0.0000
63120 ENSG00000244251 ribosomal protein L9 (RPL9) pseudogene -2.1346 0.0000
63119 ENSG00000133116 KL klotho -2.1344 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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