SHOGoiN Cell Methylome: GSM2773658
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773658 Profile download | 7020001000000000000000-715 | Sequence Read Archive | SRP074598 | SRP074598_M285 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | ICM | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000212187 | NA | 2.8074 | 0.0000 | |
| 2 | ENSG00000270759 | oocyte expressed protein (OOEP) pseudogene | 2.7416 | 0.0000 | |
| 3 | ENSG00000201744 | RNU6-34P | RNA, U6 small nuclear 34, pseudogene | 2.5850 | 0.0002 |
| 4 | ENSG00000207632 | MIR588 | microRNA 588 | 2.5850 | 0.0002 |
| 5 | ENSG00000228519 | RAN binding protein 1 pseudogene | 2.5204 | 0.0000 | |
| 6 | ENSG00000186943 | OR13C8 | olfactory receptor family 13 subfamily C member 8 | 2.5192 | 0.0000 |
| 7 | ENSG00000251735 | NA | 2.3949 | 0.0000 | |
| 8 | ENSG00000212321 | NA | 2.3219 | 0.0011 | |
| 9 | ENSG00000231388 | formin 2 (FMN2) pseudogene | 2.3219 | 0.0011 | |
| 10 | ENSG00000239205 | LINC02023 | long intergenic non-protein coding RNA 2023 | 2.3219 | 0.0011 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000182747 | SLC35D3 | solute carrier family 35 member D3 | -2.2096 | 0.0000 |
| 63340 | ENSG00000282842 | FRG2EP | FSHD region gene 2 family member E, pseudogene | -2.2095 | 0.0000 |
| 63339 | ENSG00000184221 | OLIG1 | oligodendrocyte transcription factor 1 | -2.2095 | 0.0000 |
| 63338 | ENSG00000169006 | NTSR2 | neurotensin receptor 2 | -2.2094 | 0.0000 |
| 63337 | ENSG00000185252 | ZNF74 | zinc finger protein 74 | -2.2092 | 0.0000 |
| 63336 | ENSG00000243766 | HOTTIP | HOXA distal transcript antisense RNA | -2.2088 | 0.0000 |
| 63335 | ENSG00000256825 | novel protein | -2.2069 | 0.0000 | |
| 63334 | ENSG00000198569 | SLC34A3 | solute carrier family 34 member 3 | -2.2057 | 0.0000 |
| 63333 | ENSG00000229262 | novel transcript | -2.2056 | 0.0000 | |
| 63332 | ENSG00000236896 | novel transcript | -2.2055 | 0.0000 |
