Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
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SHOGoiN Cell Methylome: GSM2773658
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773658
Profile download
7020001000000000000000-715
Sequence Read Archive
SRP074598
SRP074598_M285
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
ICM
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000212187
NA
2.8074
0.0000
2
ENSG00000270759
OOEPP1
OOEP pseudogene 1
2.7416
0.0000
3
ENSG00000201744
RNU6-34P
RNA, U6 small nuclear 34, pseudogene
2.5850
0.0002
4
ENSG00000207632
MIR588
microRNA 588
2.5850
0.0002
5
ENSG00000228519
RANBP1P1
RANBP1 pseudogene 1
2.5204
0.0000
6
ENSG00000186943
OR13C8
olfactory receptor family 13 subfamily C member 8
2.5192
0.0000
7
ENSG00000251735
NA
2.3949
0.0000
8
ENSG00000212321
Small nucleolar RNA U3
2.3219
0.0011
9
ENSG00000231388
FMN2P1
FMN2 pseudogene 1
2.3219
0.0011
10
ENSG00000239205
LINC02023
long intergenic non-protein coding RNA 2023
2.3219
0.0011
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000253405
EVX1-AS
EVX1 antisense RNA
-2.1371
0.0000
63127
ENSG00000272192
PDE7A-DT
PDE7A divergent transcript
-2.1368
0.0000
63126
ENSG00000113384
GOLPH3
golgi phosphoprotein 3
-2.1365
0.0000
63125
ENSG00000236471
novel transcript
-2.1363
0.0000
63124
ENSG00000107562
CXCL12
C-X-C motif chemokine ligand 12
-2.1359
0.0000
63123
ENSG00000182759
MAFA
MAF bZIP transcription factor A
-2.1358
0.0000
63122
ENSG00000119655
NPC2
NPC intracellular cholesterol transporter 2
-2.1358
0.0000
63121
ENSG00000178035
IMPDH2
inosine monophosphate dehydrogenase 2
-2.1357
0.0000
63120
ENSG00000244251
ribosomal protein L9 (RPL9) pseudogene
-2.1346
0.0000
63119
ENSG00000133116
KL
klotho
-2.1344
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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