Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773659

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773659


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M286Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212187 NA 3.3219 0.0000
2 ENSG00000237873 DLGAP5P2 DLGAP5 pseudogene 2 2.9886 0.0000
3 ENSG00000152931 PART1 prostate androgen-regulated transcript 1 2.8074 0.0000
4 ENSG00000224471 MTCO3P19 MT-CO3 pseudogene 19 2.8074 0.0000
5 ENSG00000226056 MTND4P32 MT-ND4 pseudogene 32 2.8074 0.0000
6 ENSG00000228316 MTATP6P19 MT-ATP6 pseudogene 19 2.8074 0.0000
7 ENSG00000232035 novel transcript 2.8074 0.0000
8 ENSG00000234886 MTND5P26 MT-ND5 pseudogene 26 2.8074 0.0000
9 ENSG00000237628 MTCO2P19 MT-CO2 pseudogene 19 2.8074 0.0000
10 ENSG00000273701 NA 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000250321 pseudogene similar to part of ribosomal protein S17 (RPS17) -2.2273 0.0000
63127 ENSG00000144354 CDCA7 cell division cycle associated 7 -2.2271 0.0000
63126 ENSG00000259283 novel transcript, antisense to IRX6 -2.2270 0.0000
63125 ENSG00000275069 NA -2.2269 0.0000
63124 ENSG00000147676 MAL2 mal, T cell differentiation protein 2 -2.2264 0.0000
63123 ENSG00000100523 DDHD1 DDHD domain containing 1 -2.2261 0.0000
63122 ENSG00000205426 KRT81 keratin 81 -2.2261 0.0000
63121 ENSG00000133101 CCNA1 cyclin A1 -2.2258 0.0000
63120 ENSG00000277957 SENP3-EIF4A1 SENP3-EIF4A1 readthrough (NMD candidate) -2.2256 0.0000
63119 ENSG00000273248 novel transcript -2.2255 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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