SHOGoiN Cell Methylome: GSM2773660

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773660


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M287Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000137745 MMP13 matrix metallopeptidase 13 3.1943 0.0000
2 ENSG00000104047 DTWD1 DTW domain containing 1 2.9110 0.0000
3 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.8552 0.0000
4 ENSG00000260747 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 (ATP5F1) pseudogene 2.8343 0.0000
5 ENSG00000179101 H3 histone, family 3B (H3.3B) (H3F3B) pseudogene 2.8074 0.0001
6 ENSG00000206716 RNU6-133P RNA, U6 small nuclear 133, pseudogene 2.8074 0.0001
7 ENSG00000259149 novel transcript 2.8074 0.0000
8 ENSG00000273360 novel transcript, antisense to CTNNA3 2.8074 0.0001
9 ENSG00000282924 ankyrin repeat domain 36 (ANKRD36) pseudogene 2.8074 0.0000
10 ENSG00000228232 GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 2.6636 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000182896 TMEM95 transmembrane protein 95 -2.2044 0.0000
63340 ENSG00000278396 novel transcript, sense intronic UNC79 -2.2037 0.0000
63339 ENSG00000263171 novel transcript, antisense to KCTD11 -2.2037 0.0000
63338 ENSG00000212458 NA -2.2036 0.0000
63337 ENSG00000264169 RN7SL665P RNA, 7SL, cytoplasmic 665, pseudogene -2.2033 0.0000
63336 ENSG00000188290 HES4 hes family bHLH transcription factor 4 -2.2030 0.0000
63335 ENSG00000207443 RNU6-417P RNA, U6 small nuclear 417, pseudogene -2.2028 0.0040
63334 ENSG00000182518 FAM104B family with sequence similarity 104 member B -2.2027 0.0000
63333 ENSG00000183248 PRR36 proline rich 36 -2.2019 0.0000
63332 ENSG00000225287 OFD1P13Y OFD1 pseudogene 13 Y-linked -2.2018 0.0923

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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