Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773660

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773660


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M287Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000137745 MMP13 matrix metallopeptidase 13 3.1943 0.0000
2 ENSG00000104047 DTWD1 DTW domain containing 1 2.9110 0.0000
3 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.8552 0.0000
4 ENSG00000260747 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 (ATP5F1) pseudogene 2.8343 0.0000
5 ENSG00000179101 H3P47 H3 histone pseudogene 47 2.8074 0.0001
6 ENSG00000206716 RNU6-133P RNA, U6 small nuclear 133, pseudogene 2.8074 0.0001
7 ENSG00000259149 novel transcript 2.8074 0.0000
8 ENSG00000273360 novel transcript, antisense to CTNNA3 2.8074 0.0001
9 ENSG00000282924 ankyrin repeat domain 36 (ANKRD36) pseudogene 2.8074 0.0000
10 ENSG00000228232 GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 2.6636 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000201412 Y RNA -2.1357 0.0000
63127 ENSG00000277985 SNORA67 small nucleolar RNA, H/ACA box 67 -2.1356 0.0000
63126 ENSG00000264735 novel transcript -2.1355 0.0000
63125 ENSG00000228421 novel transcript -2.1354 0.0000
63124 ENSG00000137078 SIT1 signaling threshold regulating transmembrane adaptor 1 -2.1348 0.0000
63123 ENSG00000114626 ABTB1 ankyrin repeat and BTB domain containing 1 -2.1346 0.0000
63122 ENSG00000170345 FOS Fos proto-oncogene, AP-1 transcription factor subunit -2.1331 0.0000
63121 ENSG00000236193 LINC01953 long intergenic non-protein coding RNA 1953 -2.1324 0.0137
63120 ENSG00000186104 CYP2R1 cytochrome P450 family 2 subfamily R member 1 -2.1319 0.0000
63119 ENSG00000274471 hect domain and RLD 2 pseudogene 7 -2.1317 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...