SHOGoiN Cell Methylome: GSM2773661

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773661


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M288Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229730 zinc finger protein 595 (ZNF595) pseudogene 2.8074 0.0000
2 ENSG00000235721 pseudogene similar to part of zinc finger protein 532 (ZNF532) 2.8074 0.0000
3 ENSG00000258184 RAB2A, member RAS oncogene family (RAB2A) pseudogene 2.6962 0.0000
4 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.5144 0.0000
5 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 2.3522 0.0000
6 ENSG00000224401 RPL7P57 ribosomal protein L7 pseudogene 57 2.3219 0.0000
7 ENSG00000224873 CDY13P chromodomain Y-linked 13 pseudogene 2.3219 0.0009
8 ENSG00000230411 OR3D1P olfactory receptor family 3 subfamily D member 1 pseudogene 2.3219 0.0000
9 ENSG00000230814 USP9YP24 USP9Y pseudogene 24 2.3219 0.0009
10 ENSG00000243705 ribosomal protein L39 (RPL39) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000246898 LINC00920 long intergenic non-protein coding RNA 920 -2.0629 0.0000
63340 ENSG00000129596 CDO1 cysteine dioxygenase type 1 -2.0611 0.0000
63339 ENSG00000269139 novel transcript, antisense to CTXN1 and TIMM44 -2.0609 0.0000
63338 ENSG00000137193 PIM1 Pim-1 proto-oncogene, serine/threonine kinase -2.0608 0.0000
63337 ENSG00000272183 novel transcript, antisense to LBX2 -2.0607 0.0000
63336 ENSG00000218265 RPS4XP7 ribosomal protein S4X pseudogene 7 -2.0606 0.0000
63335 ENSG00000235194 PPP1R3E protein phosphatase 1 regulatory subunit 3E -2.0599 0.0000
63334 ENSG00000130962 PRRG1 proline rich and Gla domain 1 -2.0596 0.0000
63333 ENSG00000135902 CHRND cholinergic receptor nicotinic delta subunit -2.0594 0.0000
63332 ENSG00000271899 MIR4466 microRNA 4466 -2.0589 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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