Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773661

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773661


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M288Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229730 zinc finger protein 595 (ZNF595) pseudogene 2.8074 0.0000
2 ENSG00000235721 pseudogene similar to part of zinc finger protein 532 (ZNF532) 2.8074 0.0000
3 ENSG00000258184 RAB2A, member RAS oncogene family (RAB2A) pseudogene 2.6962 0.0000
4 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.5144 0.0000
5 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 2.3522 0.0000
6 ENSG00000224401 RPL7P57 ribosomal protein L7 pseudogene 57 2.3219 0.0000
7 ENSG00000224873 CDY13P chromodomain Y-linked 13 pseudogene 2.3219 0.0009
8 ENSG00000230411 OR3D1P olfactory receptor family 3 subfamily D member 1 pseudogene 2.3219 0.0000
9 ENSG00000230814 USP9YP24 USP9Y pseudogene 24 2.3219 0.0009
10 ENSG00000243705 ribosomal protein L39 (RPL39) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000222440 RNU2-26P RNA, U2 small nuclear 26, pseudogene -2.0000 0.3751
63127 ENSG00000221502 MIR1245A microRNA 1245a -2.0000 0.3751
63126 ENSG00000220725 NIFU-like protein pseudogene -2.0000 0.5987
63125 ENSG00000215861 phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene -2.0000 0.5987
63124 ENSG00000214745 GOT2P6 GOT2 pseudogene 6 -2.0000 1.0000
63123 ENSG00000212475 RNU6-400P RNA, U6 small nuclear 400, pseudogene -2.0000 0.5987
63122 ENSG00000205030 OR5L2 olfactory receptor family 5 subfamily L member 2 -2.0000 0.3751
63121 ENSG00000201420 RNA5SP512 RNA, 5S ribosomal pseudogene 512 -2.0000 0.3751
63120 ENSG00000201285 RNA5SP524 RNA, 5S ribosomal pseudogene 524 -2.0000 0.5987
63119 ENSG00000196098 OR5K4 olfactory receptor family 5 subfamily K member 4 -2.0000 0.3751

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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