Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773662

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773662


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M289Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212441 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene 1.5850 0.0165
2 ENSG00000225397 pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT) 1.5850 0.0165
3 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 1.5850 0.0003
4 ENSG00000269833 novel zinc finger protein pseudogene 1.5850 0.0000
5 ENSG00000207874 MIR610 microRNA 610 1.3900 0.0000
6 ENSG00000129862 VCY1B variable charge Y-linked 1B 1.2925 0.0021
7 ENSG00000199001 MIR448 microRNA 448 1.2925 0.0021
8 ENSG00000270074 novel transcript 1.2925 0.0021
9 ENSG00000259086 KIAA1143P1 KIAA1143 pseudogene 1 1.2667 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.2233 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000236708 SDK1-AS1 SDK1 antisense RNA 1 -1.9897 0.0000
63127 ENSG00000256955 novel transcript -1.9897 0.0000
63126 ENSG00000279605 TEC -1.9895 0.0000
63125 ENSG00000138316 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 -1.9891 0.0000
63124 ENSG00000249960 embryonic ectoderm development (EED) pseudogene -1.9888 0.0000
63123 ENSG00000102977 ACD ACD shelterin complex subunit and telomerase recruitment factor -1.9888 0.0000
63122 ENSG00000173418 NAA20 N-alpha-acetyltransferase 20, NatB catalytic subunit -1.9881 0.0000
63121 ENSG00000272533 SNORA28 small nucleolar RNA, H/ACA box 28 -1.9876 0.0000
63120 ENSG00000273342 novel transcript -1.9876 0.0000
63119 ENSG00000187984 ANKRD19P ankyrin repeat domain 19, pseudogene -1.9876 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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