SHOGoiN Cell Methylome: GSM2773662

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773662


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M289Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212441 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene 1.5850 0.0165
2 ENSG00000225397 pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT) 1.5850 0.0165
3 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 1.5850 0.0003
4 ENSG00000269833 novel zinc finger protein pseudogene 1.5850 0.0000
5 ENSG00000207874 MIR610 microRNA 610 1.3900 0.0000
6 ENSG00000129862 VCY1B variable charge Y-linked 1B 1.2925 0.0021
7 ENSG00000199001 MIR448 microRNA 448 1.2925 0.0021
8 ENSG00000270074 novel transcript 1.2925 0.0021
9 ENSG00000259086 KIAA1143 (KIAA1143) pseudogene 1.2667 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.2233 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000205502 C2CD4B C2 calcium dependent domain containing 4B -2.0564 0.0000
63340 ENSG00000263366 ABHD17AP5 abhydrolase domain containing 17A pseudogene 5 -2.0553 0.0000
63339 ENSG00000273045 C2orf15 chromosome 2 open reading frame 15 -2.0552 0.0000
63338 ENSG00000263301 novel transcript, antisense to FGF11 -2.0545 0.0000
63336 ENSG00000188290 HES4 hes family bHLH transcription factor 4 -2.0541 0.0000
63335 ENSG00000258378 novel transcript, antisense to TIMM9 -2.0539 0.0000
63334 ENSG00000253186 coiled-coil domain containing 144 (CCDC144) pseudogene -2.0535 0.0000
63333 ENSG00000226872 novel transcript -2.0530 0.0000
63332 ENSG00000255108 novel transcript -2.0529 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.2233 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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