SHOGoiN Cell Methylome: GSM2773663
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773663 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M290 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000255477 | novel transcript | 3.4594 | 0.0000 | |
| 2 | ENSG00000249847 | novel transcript | 3.1699 | 0.0000 | |
| 3 | ENSG00000198523 | PLN | phospholamban | 2.5850 | 0.0000 |
| 4 | ENSG00000212611 | NA | 2.5850 | 0.0000 | |
| 5 | ENSG00000219284 | novel pseudogene | 2.5850 | 0.0000 | |
| 6 | ENSG00000277797 | novel transcript | 2.5850 | 0.0000 | |
| 7 | ENSG00000278011 | novel transcript | 2.5000 | 0.0000 | |
| 8 | ENSG00000254919 | novel transcript | 2.4387 | 0.0000 | |
| 9 | ENSG00000257302 | FAHD2P1 | fumarylacetoacetate hydrolase domain containing 2 pseudogene 1 | 2.4175 | 0.0000 |
| 10 | ENSG00000182365 | OR5F2P | olfactory receptor family 5 subfamily F member 2 pseudogene | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000124227 | ANKRD60 | ankyrin repeat domain 60 | -2.0156 | 0.0000 |
| 63340 | ENSG00000200632 | SNORD113-7 | small nucleolar RNA, C/D box 113-7 | -2.0154 | 0.0194 |
| 63339 | ENSG00000200215 | SNORD113-6 | small nucleolar RNA, C/D box 113-6 | -2.0154 | 0.0194 |
| 63338 | ENSG00000238290 | novel transcript | -2.0152 | 0.0000 | |
| 63337 | ENSG00000171551 | ECEL1 | endothelin converting enzyme like 1 | -2.0148 | 0.0000 |
| 63336 | ENSG00000188859 | FAM78B | family with sequence similarity 78 member B | -2.0146 | 0.0000 |
| 63335 | ENSG00000228950 | novel transcript | -2.0145 | 0.0000 | |
| 63334 | ENSG00000199104 | MIR346 | microRNA 346 | -2.0143 | 0.0000 |
| 63333 | ENSG00000228716 | DHFR | dihydrofolate reductase | -2.0138 | 0.0000 |
| 63332 | ENSG00000106511 | MEOX2 | mesenchyme homeobox 2 | -2.0138 | 0.0000 |
