Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773663

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773663


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M290Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255477 novel transcript 3.4594 0.0000
2 ENSG00000249847 novel transcript 3.1699 0.0000
3 ENSG00000198523 PLN phospholamban 2.5850 0.0000
4 ENSG00000212611 Small nucleolar RNA SNORD30 2.5850 0.0000
5 ENSG00000219284 novel pseudogene 2.5850 0.0000
6 ENSG00000277797 novel transcript 2.5850 0.0000
7 ENSG00000278011 novel transcript 2.5000 0.0000
8 ENSG00000254919 novel transcript 2.4387 0.0000
9 ENSG00000257302 FAHD2P1 fumarylacetoacetate hydrolase domain containing 2 pseudogene 1 2.4175 0.0000
10 ENSG00000182365 OR5F2P olfactory receptor family 5 subfamily F member 2 pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000275836 MIR6068 microRNA 6068 -1.9807 0.0000
63127 ENSG00000140557 ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 -1.9805 0.0000
63126 ENSG00000064547 LPAR2 lysophosphatidic acid receptor 2 -1.9805 0.0000
63125 ENSG00000277469 NA -1.9797 0.0000
63124 ENSG00000145632 PLK2 polo like kinase 2 -1.9796 0.0000
63123 ENSG00000224640 SRSF1P1 serine and arginine rich splicing factor 1 pseudogene 1 -1.9788 0.1572
63122 ENSG00000224914 LINC00863 long intergenic non-protein coding RNA 863 -1.9788 0.0000
63121 ENSG00000101278 RPS10P5 ribosomal protein S10 pseudogene 5 -1.9787 0.0000
63120 ENSG00000102125 TAZ tafazzin -1.9783 0.0000
63119 ENSG00000113763 UNC5A unc-5 netrin receptor A -1.9774 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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