Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
Tissue Image
SHOGoiN Cell Methylome: GSM2773663
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773663
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M290
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000255477
novel transcript
3.4594
0.0000
2
ENSG00000249847
novel transcript
3.1699
0.0000
3
ENSG00000198523
PLN
phospholamban
2.5850
0.0000
4
ENSG00000212611
Small nucleolar RNA SNORD30
2.5850
0.0000
5
ENSG00000219284
novel pseudogene
2.5850
0.0000
6
ENSG00000277797
novel transcript
2.5850
0.0000
7
ENSG00000278011
novel transcript
2.5000
0.0000
8
ENSG00000254919
novel transcript
2.4387
0.0000
9
ENSG00000257302
FAHD2P1
fumarylacetoacetate hydrolase domain containing 2 pseudogene 1
2.4175
0.0000
10
ENSG00000182365
OR5F2P
olfactory receptor family 5 subfamily F member 2 pseudogene
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000275836
MIR6068
microRNA 6068
-1.9807
0.0000
63127
ENSG00000140557
ST8SIA2
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
-1.9805
0.0000
63126
ENSG00000064547
LPAR2
lysophosphatidic acid receptor 2
-1.9805
0.0000
63125
ENSG00000277469
NA
-1.9797
0.0000
63124
ENSG00000145632
PLK2
polo like kinase 2
-1.9796
0.0000
63123
ENSG00000224640
SRSF1P1
serine and arginine rich splicing factor 1 pseudogene 1
-1.9788
0.1572
63122
ENSG00000224914
LINC00863
long intergenic non-protein coding RNA 863
-1.9788
0.0000
63121
ENSG00000101278
RPS10P5
ribosomal protein S10 pseudogene 5
-1.9787
0.0000
63120
ENSG00000102125
TAZ
tafazzin
-1.9783
0.0000
63119
ENSG00000113763
UNC5A
unc-5 netrin receptor A
-1.9774
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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