Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773664

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773664


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M291Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273487 novel transcript 2.8074 0.0000
2 ENSG00000233750 CICP27 capicua transcriptional repressor pseudogene 27 2.5850 0.0000
3 ENSG00000239767 novel transcript 2.5850 0.0001
4 ENSG00000249904 chromosome 1 open reading frame 146 pseudogene 2.5850 0.0001
5 ENSG00000259810 novel transcript 2.5850 0.0000
6 ENSG00000196507 TCEAL3 transcription elongation factor A like 3 2.3219 0.0000
7 ENSG00000205186 FABP9 fatty acid binding protein 9 2.3219 0.0007
8 ENSG00000223269 RN7SKP53 RN7SK pseudogene 53 2.3219 0.0000
9 ENSG00000237353 PATE4 prostate and testis expressed 4 2.3219 0.0007
10 ENSG00000249425 LINC02477 long intergenic non-protein coding RNA 2477 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000181315 ZNF322 zinc finger protein 322 -2.0055 0.0000
63127 ENSG00000248916 NUP210P3 nucleoporin 210 pseudogene 3 -2.0055 0.0000
63126 ENSG00000213585 VDAC1 voltage dependent anion channel 1 -2.0054 0.0000
63125 ENSG00000238387 NA -2.0053 0.0000
63124 ENSG00000188620 HMX3 H6 family homeobox 3 -2.0049 0.0000
63123 ENSG00000151005 TKTL2 transketolase like 2 -2.0047 0.0000
63122 ENSG00000180233 ZNRF2 zinc and ring finger 2 -2.0046 0.0000
63121 ENSG00000203809 LIN28B-AS1 LIN28B antisense RNA 1 -2.0043 0.0000
63120 ENSG00000196166 C8orf86 chromosome 8 open reading frame 86 -2.0038 0.0000
63119 ENSG00000222020 HDAC4-AS1 HDAC4 antisense RNA 1 -2.0027 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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