SHOGoiN Cell Methylome: GSM2773664

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773664


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M291Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273487 novel transcript 2.8074 0.0000
2 ENSG00000233750 CICP27 capicua transcriptional repressor pseudogene 27 2.5850 0.0000
3 ENSG00000239767 novel transcript 2.5850 0.0001
4 ENSG00000249904 chromosome 1 open reading frame 146 pseudogene 2.5850 0.0001
5 ENSG00000259810 novel transcript 2.5850 0.0000
6 ENSG00000196507 TCEAL3 transcription elongation factor A like 3 2.3219 0.0000
7 ENSG00000205186 FABP9 fatty acid binding protein 9 2.3219 0.0007
8 ENSG00000223269 RN7SKP53 RN7SK pseudogene 53 2.3219 0.0000
9 ENSG00000237353 PATE4 prostate and testis expressed 4 2.3219 0.0007
10 ENSG00000249425 LINC02477 long intergenic non-protein coding RNA 2477 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000177108 ZDHHC22 zinc finger DHHC-type containing 22 -2.0678 0.0000
63340 ENSG00000104332 SFRP1 secreted frizzled related protein 1 -2.0676 0.0000
63339 ENSG00000267630 ATPase, aminophospholipid transporter, class I, type 8 pseudogene -2.0670 0.0000
63338 ENSG00000257551 HLX-AS1 HLX antisense RNA 1 -2.0664 0.0000
63337 ENSG00000265487 novel transcript, antisense to L3MBTL4 -2.0662 0.0000
63336 ENSG00000271824 SMIM32 small integral membrane protein 32 -2.0660 0.0000
63335 ENSG00000248672 LY75-CD302 LY75-CD302 readthrough -2.0658 0.0000
63334 ENSG00000211795 TRAV8-6 T cell receptor alpha variable 8-6 -2.0658 0.0065
63333 ENSG00000112379 ARFGEF3 ARFGEF family member 3 -2.0654 0.0000
63332 ENSG00000187135 VSTM2B V-set and transmembrane domain containing 2B -2.0652 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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