SHOGoiN Cell Methylome: GSM2773665
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773665 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M292 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000216378 | arginase, type II (ARG2) pseudogene | 2.5850 | 0.0000 | |
| 2 | ENSG00000229641 | CYP2C56P | cytochrome P450 family 2 subfamily C member 56, pseudogene | 2.5850 | 0.0000 |
| 3 | ENSG00000232549 | SRD5A1P1 | steroid 5 alpha-reductase 1 pseudogene 1 | 2.5850 | 0.0000 |
| 4 | ENSG00000251578 | TRBV21-1 | T cell receptor beta variable 21-1 (pseudogene) | 2.5850 | 0.0000 |
| 5 | ENSG00000153140 | CETN3 | centrin 3 | 2.3219 | 0.0000 |
| 6 | ENSG00000200278 | RNA5SP352 | RNA, 5S ribosomal pseudogene 352 | 2.3219 | 0.0001 |
| 7 | ENSG00000214074 | RPL23AP39 | ribosomal protein L23a pseudogene 39 | 2.3219 | 0.0000 |
| 8 | ENSG00000224488 | SAMM50P1 | SAMM50 sorting and assembly machinery component pseudogene 1 | 2.3219 | 0.0000 |
| 9 | ENSG00000226405 | hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene | 2.3219 | 0.0001 | |
| 10 | ENSG00000229636 | KRT8P21 | keratin 8 pseudogene 21 | 2.3219 | 0.0001 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000202521 | RNA5S7 | RNA, 5S ribosomal 7 | -2.0596 | 0.0000 |
| 63340 | ENSG00000200343 | RNA5S8 | RNA, 5S ribosomal 8 | -2.0596 | 0.0000 |
| 63339 | ENSG00000274326 | NA | -2.0591 | 0.0134 | |
| 63338 | ENSG00000175984 | DENND2C | DENN domain containing 2C | -2.0590 | 0.0000 |
| 63337 | ENSG00000233270 | SNRPEP4 | small nuclear ribonucleoprotein polypeptide E pseudogene 4 | -2.0589 | 0.0000 |
| 63336 | ENSG00000184897 | H1FX | H1 histone family member X | -2.0580 | 0.0000 |
| 63335 | ENSG00000197323 | TRIM33 | tripartite motif containing 33 | -2.0575 | 0.0000 |
| 63334 | ENSG00000162913 | OBSCN-AS1 | OBSCN antisense RNA 1 | -2.0573 | 0.0000 |
| 63333 | ENSG00000265975 | novel transcript | -2.0572 | 0.0000 | |
| 63332 | ENSG00000265240 | myotubularin related protein 14 (MTMR14) pseudogene | -2.0572 | 0.3870 |
