SHOGoiN Cell Methylome: GSM2773665

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773665


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M292Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000216378 arginase, type II (ARG2) pseudogene 2.5850 0.0000
2 ENSG00000229641 CYP2C56P cytochrome P450 family 2 subfamily C member 56, pseudogene 2.5850 0.0000
3 ENSG00000232549 SRD5A1P1 steroid 5 alpha-reductase 1 pseudogene 1 2.5850 0.0000
4 ENSG00000251578 TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) 2.5850 0.0000
5 ENSG00000153140 CETN3 centrin 3 2.3219 0.0000
6 ENSG00000200278 RNA5SP352 RNA, 5S ribosomal pseudogene 352 2.3219 0.0001
7 ENSG00000214074 RPL23AP39 ribosomal protein L23a pseudogene 39 2.3219 0.0000
8 ENSG00000224488 SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 2.3219 0.0000
9 ENSG00000226405 hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene 2.3219 0.0001
10 ENSG00000229636 KRT8P21 keratin 8 pseudogene 21 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000202521 RNA5S7 RNA, 5S ribosomal 7 -2.0596 0.0000
63340 ENSG00000200343 RNA5S8 RNA, 5S ribosomal 8 -2.0596 0.0000
63339 ENSG00000274326 NA -2.0591 0.0134
63338 ENSG00000175984 DENND2C DENN domain containing 2C -2.0590 0.0000
63337 ENSG00000233270 SNRPEP4 small nuclear ribonucleoprotein polypeptide E pseudogene 4 -2.0589 0.0000
63336 ENSG00000184897 H1FX H1 histone family member X -2.0580 0.0000
63335 ENSG00000197323 TRIM33 tripartite motif containing 33 -2.0575 0.0000
63334 ENSG00000162913 OBSCN-AS1 OBSCN antisense RNA 1 -2.0573 0.0000
63333 ENSG00000265975 novel transcript -2.0572 0.0000
63332 ENSG00000265240 myotubularin related protein 14 (MTMR14) pseudogene -2.0572 0.3870

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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