Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
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SHOGoiN Cell Methylome: GSM2773665
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773665
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M292
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000216378
arginase, type II (ARG2) pseudogene
2.5850
0.0000
2
ENSG00000229641
CYP2C56P
cytochrome P450 family 2 subfamily C member 56, pseudogene
2.5850
0.0000
3
ENSG00000232549
SRD5A1P1
steroid 5 alpha-reductase 1 pseudogene 1
2.5850
0.0000
4
ENSG00000251578
TRBV21-1
T cell receptor beta variable 21-1 (pseudogene)
2.5850
0.0000
5
ENSG00000153140
CETN3
centrin 3
2.3219
0.0000
6
ENSG00000200278
RNA5SP352
RNA, 5S ribosomal pseudogene 352
2.3219
0.0001
7
ENSG00000214074
RPL23AP39
ribosomal protein L23a pseudogene 39
2.3219
0.0000
8
ENSG00000224488
SAMM50P1
SAMM50 sorting and assembly machinery component pseudogene 1
2.3219
0.0000
9
ENSG00000226405
hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene
2.3219
0.0001
10
ENSG00000229636
KRT8P21
keratin 8 pseudogene 21
2.3219
0.0001
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000227806
OR5W1P
olfactory receptor family 5 subfamily W member 1 pseudogene
-2.0000
0.6122
63127
ENSG00000226818
SLC6A6P1
solute carrier family 6 member 6 pseudogene 1
-2.0000
1.0000
63126
ENSG00000225639
PGAM1P2
phosphoglycerate mutase 1 pseudogene 2
-2.0000
0.3904
63125
ENSG00000224691
novel transcript
-2.0000
1.0000
63124
ENSG00000224583
novel transcript
-2.0000
1.0000
63123
ENSG00000224539
SAGE4P
sarcoma antigen 4, pseudogene
-2.0000
1.0000
63122
ENSG00000224510
POLR2KP2
RNA polymerase II subunit K pseudogene 2
-2.0000
0.1657
63121
ENSG00000216518
EEF1GP6
eukaryotic translation elongation factor 1 gamma pseudogene 6
-2.0000
0.6122
63120
ENSG00000215875
ST13P20
ST13, Hsp70 interacting protein pseudogene 20
-2.0000
0.3904
63119
ENSG00000215162
LINC00269
long intergenic non-protein coding RNA 269
-2.0000
1.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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