Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773665

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773665


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M292Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000216378 arginase, type II (ARG2) pseudogene 2.5850 0.0000
2 ENSG00000229641 CYP2C56P cytochrome P450 family 2 subfamily C member 56, pseudogene 2.5850 0.0000
3 ENSG00000232549 SRD5A1P1 steroid 5 alpha-reductase 1 pseudogene 1 2.5850 0.0000
4 ENSG00000251578 TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) 2.5850 0.0000
5 ENSG00000153140 CETN3 centrin 3 2.3219 0.0000
6 ENSG00000200278 RNA5SP352 RNA, 5S ribosomal pseudogene 352 2.3219 0.0001
7 ENSG00000214074 RPL23AP39 ribosomal protein L23a pseudogene 39 2.3219 0.0000
8 ENSG00000224488 SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 2.3219 0.0000
9 ENSG00000226405 hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene 2.3219 0.0001
10 ENSG00000229636 KRT8P21 keratin 8 pseudogene 21 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000227806 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene -2.0000 0.6122
63127 ENSG00000226818 SLC6A6P1 solute carrier family 6 member 6 pseudogene 1 -2.0000 1.0000
63126 ENSG00000225639 PGAM1P2 phosphoglycerate mutase 1 pseudogene 2 -2.0000 0.3904
63125 ENSG00000224691 novel transcript -2.0000 1.0000
63124 ENSG00000224583 novel transcript -2.0000 1.0000
63123 ENSG00000224539 SAGE4P sarcoma antigen 4, pseudogene -2.0000 1.0000
63122 ENSG00000224510 POLR2KP2 RNA polymerase II subunit K pseudogene 2 -2.0000 0.1657
63121 ENSG00000216518 EEF1GP6 eukaryotic translation elongation factor 1 gamma pseudogene 6 -2.0000 0.6122
63120 ENSG00000215875 ST13P20 ST13, Hsp70 interacting protein pseudogene 20 -2.0000 0.3904
63119 ENSG00000215162 LINC00269 long intergenic non-protein coding RNA 269 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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