Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773665

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773665 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M292	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000216378		arginase, type II (ARG2) pseudogene	2.5850	0.0000
2	ENSG00000229641	CYP2C56P	cytochrome P450 family 2 subfamily C member 56, pseudogene	2.5850	0.0000
3	ENSG00000232549	SRD5A1P1	steroid 5 alpha-reductase 1 pseudogene 1	2.5850	0.0000
4	ENSG00000251578	TRBV21-1	T cell receptor beta variable 21-1 (pseudogene)	2.5850	0.0000
5	ENSG00000153140	CETN3	centrin 3	2.3219	0.0000
6	ENSG00000200278	RNA5SP352	RNA, 5S ribosomal pseudogene 352	2.3219	0.0001
7	ENSG00000214074	RPL23AP39	ribosomal protein L23a pseudogene 39	2.3219	0.0000
8	ENSG00000224488	SAMM50P1	SAMM50 sorting and assembly machinery component pseudogene 1	2.3219	0.0000
9	ENSG00000226405		hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene	2.3219	0.0001
10	ENSG00000229636	KRT8P21	keratin 8 pseudogene 21	2.3219	0.0001

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000227806	OR5W1P	olfactory receptor family 5 subfamily W member 1 pseudogene	-2.0000	0.6122
63127	ENSG00000226818	SLC6A6P1	solute carrier family 6 member 6 pseudogene 1	-2.0000	1.0000
63126	ENSG00000225639	PGAM1P2	phosphoglycerate mutase 1 pseudogene 2	-2.0000	0.3904
63125	ENSG00000224691		novel transcript	-2.0000	1.0000
63124	ENSG00000224583		novel transcript	-2.0000	1.0000
63123	ENSG00000224539	SAGE4P	sarcoma antigen 4, pseudogene	-2.0000	1.0000
63122	ENSG00000224510	POLR2KP2	RNA polymerase II subunit K pseudogene 2	-2.0000	0.1657
63121	ENSG00000216518	EEF1GP6	eukaryotic translation elongation factor 1 gamma pseudogene 6	-2.0000	0.6122
63120	ENSG00000215875	ST13P20	ST13, Hsp70 interacting protein pseudogene 20	-2.0000	0.3904
63119	ENSG00000215162	LINC00269	long intergenic non-protein coding RNA 269	-2.0000	1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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