Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773666

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773666 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M293	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000201420	RNA5SP512	RNA, 5S ribosomal pseudogene 512	3.0000	0.0000
2	ENSG00000251489		solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene	2.8074	0.0000
3	ENSG00000200107	RNU6-1249P	RNA, U6 small nuclear 1249, pseudogene	2.6274	0.0000
4	ENSG00000262135	GARS1P1	glycyl-tRNA synthetase 1 pseudogene 1	2.6274	0.0000
5	ENSG00000214684	ANKRD49P4	ANKRD49 pseudogene 4	2.5850	0.0000
6	ENSG00000180481	GLIPR1L2	GLIPR1 like 2	2.3219	0.0000
7	ENSG00000183310	OR2T34	olfactory receptor family 2 subfamily T member 34	2.3219	0.0000
8	ENSG00000226388	ELL2P4	elongation factor for RNA polymerase II 2 pseudogene 4	2.3219	0.0003
9	ENSG00000230300	STARD13-IT1	STARD13 intronic transcript 1	2.3219	0.0003
10	ENSG00000235721		pseudogene similar to part of zinc finger protein 532 (ZNF532)	2.3219	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000102003	SYP	synaptophysin	-2.0639	0.0000
63127	ENSG00000267388		novel transcript	-2.0638	0.0000
63126	ENSG00000279851		novel transcript	-2.0635	0.0000
63125	ENSG00000100300	TSPO	translocator protein	-2.0633	0.0000
63124	ENSG00000241032	RN7SL709P	RNA, 7SL, cytoplasmic 709, pseudogene	-2.0628	0.0000
63123	ENSG00000254635	WAC-AS1	WAC antisense RNA 1 (head to head)	-2.0616	0.0000
63122	ENSG00000206634	SNORA22	small nucleolar RNA, H/ACA box 22	-2.0615	0.0000
63121	ENSG00000230778	ANKRD63	ankyrin repeat domain 63	-2.0613	0.0000
63120	ENSG00000215354	FAM90A24P	family with sequence similarity 90 member A24, pseudogene	-2.0611	0.0000
63119	ENSG00000136986	DERL1	derlin 1	-2.0608	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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