Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773666
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773666
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M293
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000201420
RNA5SP512
RNA, 5S ribosomal pseudogene 512
3.0000
0.0000
2
ENSG00000251489
solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene
2.8074
0.0000
3
ENSG00000200107
RNU6-1249P
RNA, U6 small nuclear 1249, pseudogene
2.6274
0.0000
4
ENSG00000262135
GARS1P1
glycyl-tRNA synthetase 1 pseudogene 1
2.6274
0.0000
5
ENSG00000214684
ANKRD49P4
ANKRD49 pseudogene 4
2.5850
0.0000
6
ENSG00000180481
GLIPR1L2
GLIPR1 like 2
2.3219
0.0000
7
ENSG00000183310
OR2T34
olfactory receptor family 2 subfamily T member 34
2.3219
0.0000
8
ENSG00000226388
ELL2P4
elongation factor for RNA polymerase II 2 pseudogene 4
2.3219
0.0003
9
ENSG00000230300
STARD13-IT1
STARD13 intronic transcript 1
2.3219
0.0003
10
ENSG00000235721
pseudogene similar to part of zinc finger protein 532 (ZNF532)
2.3219
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000102003
SYP
synaptophysin
-2.0639
0.0000
63127
ENSG00000267388
novel transcript
-2.0638
0.0000
63126
ENSG00000279851
novel transcript
-2.0635
0.0000
63125
ENSG00000100300
TSPO
translocator protein
-2.0633
0.0000
63124
ENSG00000241032
RN7SL709P
RNA, 7SL, cytoplasmic 709, pseudogene
-2.0628
0.0000
63123
ENSG00000254635
WAC-AS1
WAC antisense RNA 1 (head to head)
-2.0616
0.0000
63122
ENSG00000206634
SNORA22
small nucleolar RNA, H/ACA box 22
-2.0615
0.0000
63121
ENSG00000230778
ANKRD63
ankyrin repeat domain 63
-2.0613
0.0000
63120
ENSG00000215354
FAM90A24P
family with sequence similarity 90 member A24, pseudogene
-2.0611
0.0000
63119
ENSG00000136986
DERL1
derlin 1
-2.0608
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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