SHOGoiN Cell Methylome: GSM2773666

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773666


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M293Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201420 RNA5SP512 RNA, 5S ribosomal pseudogene 512 3.0000 0.0000
2 ENSG00000251489 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene 2.8074 0.0000
3 ENSG00000200107 RNU6-1249P RNA, U6 small nuclear 1249, pseudogene 2.6274 0.0000
4 ENSG00000262135 GARSP1 glycyl-tRNA synthetase pseudogene 1 2.6274 0.0000
5 ENSG00000214684 fetal globin-inducing factor (FGIF) pseudogene 2.5850 0.0000
6 ENSG00000180481 GLIPR1L2 GLIPR1 like 2 2.3219 0.0000
7 ENSG00000183310 OR2T34 olfactory receptor family 2 subfamily T member 34 2.3219 0.0000
8 ENSG00000226388 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 2.3219 0.0003
9 ENSG00000230300 STARD13-IT1 STARD13 intronic transcript 1 2.3219 0.0003
10 ENSG00000235721 pseudogene similar to part of zinc finger protein 532 (ZNF532) 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000259802 novel transcript, antisense to MARCH6 -2.1328 0.0000
63340 ENSG00000105509 HAS1 hyaluronan synthase 1 -2.1327 0.0000
63339 ENSG00000267909 CCDC177 coiled-coil domain containing 177 -2.1323 0.0000
63338 ENSG00000180549 FUT7 fucosyltransferase 7 -2.1320 0.0000
63337 ENSG00000185304 RGPD2 RANBP2 like and GRIP domain containing 2 -2.1309 0.0000
63336 ENSG00000182257 PRR34 PRR34 long non-coding RNA -2.1303 0.0000
63335 ENSG00000099246 RAB18 RAB18, member RAS oncogene family -2.1293 0.0000
63334 ENSG00000183034 OTOP2 otopetrin 2 -2.1287 0.0000
63333 ENSG00000121966 CXCR4 C-X-C motif chemokine receptor 4 -2.1286 0.0000
63332 ENSG00000253882 family with sequence similarity 115, member C (FAM115C) pseudogene -2.1282 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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