SHOGoiN Cell Methylome: GSM2773666
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773666 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M293 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000201420 | RNA5SP512 | RNA, 5S ribosomal pseudogene 512 | 3.0000 | 0.0000 |
| 2 | ENSG00000251489 | solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene | 2.8074 | 0.0000 | |
| 3 | ENSG00000200107 | RNU6-1249P | RNA, U6 small nuclear 1249, pseudogene | 2.6274 | 0.0000 |
| 4 | ENSG00000262135 | GARSP1 | glycyl-tRNA synthetase pseudogene 1 | 2.6274 | 0.0000 |
| 5 | ENSG00000214684 | fetal globin-inducing factor (FGIF) pseudogene | 2.5850 | 0.0000 | |
| 6 | ENSG00000180481 | GLIPR1L2 | GLIPR1 like 2 | 2.3219 | 0.0000 |
| 7 | ENSG00000183310 | OR2T34 | olfactory receptor family 2 subfamily T member 34 | 2.3219 | 0.0000 |
| 8 | ENSG00000226388 | ELL2P4 | elongation factor for RNA polymerase II 2 pseudogene 4 | 2.3219 | 0.0003 |
| 9 | ENSG00000230300 | STARD13-IT1 | STARD13 intronic transcript 1 | 2.3219 | 0.0003 |
| 10 | ENSG00000235721 | pseudogene similar to part of zinc finger protein 532 (ZNF532) | 2.3219 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000259802 | novel transcript, antisense to MARCH6 | -2.1328 | 0.0000 | |
| 63340 | ENSG00000105509 | HAS1 | hyaluronan synthase 1 | -2.1327 | 0.0000 |
| 63339 | ENSG00000267909 | CCDC177 | coiled-coil domain containing 177 | -2.1323 | 0.0000 |
| 63338 | ENSG00000180549 | FUT7 | fucosyltransferase 7 | -2.1320 | 0.0000 |
| 63337 | ENSG00000185304 | RGPD2 | RANBP2 like and GRIP domain containing 2 | -2.1309 | 0.0000 |
| 63336 | ENSG00000182257 | PRR34 | PRR34 long non-coding RNA | -2.1303 | 0.0000 |
| 63335 | ENSG00000099246 | RAB18 | RAB18, member RAS oncogene family | -2.1293 | 0.0000 |
| 63334 | ENSG00000183034 | OTOP2 | otopetrin 2 | -2.1287 | 0.0000 |
| 63333 | ENSG00000121966 | CXCR4 | C-X-C motif chemokine receptor 4 | -2.1286 | 0.0000 |
| 63332 | ENSG00000253882 | family with sequence similarity 115, member C (FAM115C) pseudogene | -2.1282 | 0.0000 |
