SHOGoiN Cell Methylome: GSM2773667

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773667


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M294Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.8074 0.0000
2 ENSG00000212428 NA 2.5850 0.0000
3 ENSG00000199622 RN7SKP20 RN7SK pseudogene 20 2.3219 0.0003
4 ENSG00000204296 TSBP1 testis expressed basic protein 1 2.3219 0.0003
5 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.3219 0.0003
6 ENSG00000219807 ARF1P1 ADP ribosylation factor 1 pseudogene 1 2.3219 0.0003
7 ENSG00000251035 WBP1LP4 WBP1L pseudogene 4 2.3219 0.0000
8 ENSG00000226453 LINC02542 long intergenic non-protein coding RNA 2542 2.2999 0.0000
9 ENSG00000228231 novel transcript 2.1610 0.0000
10 ENSG00000217416 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 2.0575 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000211923 IGHD3-10 immunoglobulin heavy diversity 3-10 -2.0373 0.0000
63340 ENSG00000153165 RGPD3 RANBP2 like and GRIP domain containing 3 -2.0372 0.0000
63339 ENSG00000284000 MIR4458 microRNA 4458 -2.0366 0.0000
63338 ENSG00000054983 GALC galactosylceramidase -2.0365 0.0000
63337 ENSG00000275180 novel transcript -2.0363 0.0000
63336 ENSG00000264755 MIR3131 microRNA 3131 -2.0363 0.0000
63335 ENSG00000265681 RPL17 ribosomal protein L17 -2.0362 0.0000
63334 ENSG00000215472 RPL17-C18orf32 RPL17-C18orf32 readthrough -2.0362 0.0000
63333 ENSG00000026025 VIM vimentin -2.0352 0.0000
63332 ENSG00000262039 novel transcript, antisense to PHB -2.0351 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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