Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773667

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773667


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M294Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.8074 0.0000
2 ENSG00000212428 Small nucleolar RNA SNORD115 2.5850 0.0000
3 ENSG00000199622 RN7SKP20 RN7SK pseudogene 20 2.3219 0.0003
4 ENSG00000204296 TSBP1 testis expressed basic protein 1 2.3219 0.0003
5 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.3219 0.0003
6 ENSG00000219807 ARF1P1 ADP ribosylation factor 1 pseudogene 1 2.3219 0.0003
7 ENSG00000251035 WBP1LP4 WBP1L pseudogene 4 2.3219 0.0000
8 ENSG00000226453 LINC02542 long intergenic non-protein coding RNA 2542 2.2999 0.0000
9 ENSG00000228231 TINAG-AS1 TINAG antisense RNA 1 2.1610 0.0000
10 ENSG00000217416 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 2.0575 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000252012 RNA5SP521 RNA, 5S ribosomal pseudogene 521 -1.9988 0.0000
63172 ENSG00000144339 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 -1.9986 0.0000
63171 ENSG00000103490 PYCARD PYD and CARD domain containing -1.9979 0.0000
63170 ENSG00000153904 DDAH1 dimethylarginine dimethylaminohydrolase 1 -1.9979 0.0000
63169 ENSG00000206785 SNORA15B-2 small nucleolar RNA, H/ACA box 15B-2 -1.9978 0.0000
63168 ENSG00000168159 RNF187 ring finger protein 187 -1.9975 0.0000
63167 ENSG00000229528 novel transcript -1.9972 0.0000
63166 ENSG00000160606 TLCD1 TLC domain containing 1 -1.9966 0.0000
63165 ENSG00000263813 MIR3679 microRNA 3679 -1.9959 0.0000
63164 ENSG00000213145 CRIP1 cysteine rich protein 1 -1.9958 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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