Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773667

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773667


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M294Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.8074 0.0000
2 ENSG00000212428 NA 2.5850 0.0000
3 ENSG00000199622 RN7SKP20 RN7SK pseudogene 20 2.3219 0.0003
4 ENSG00000204296 TSBP1 testis expressed basic protein 1 2.3219 0.0003
5 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.3219 0.0003
6 ENSG00000219807 ARF1P1 ADP ribosylation factor 1 pseudogene 1 2.3219 0.0003
7 ENSG00000251035 WBP1LP4 WBP1L pseudogene 4 2.3219 0.0000
8 ENSG00000226453 LINC02542 long intergenic non-protein coding RNA 2542 2.2999 0.0000
9 ENSG00000228231 novel transcript 2.1610 0.0000
10 ENSG00000217416 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 2.0575 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63221 ENSG00000262296 novel transcript, antisense to USP43 -2.0009 0.0000
63220 ENSG00000171084 FAM86JP family with sequence similarity 86 member J, pseudogene -2.0009 0.0000
63219 ENSG00000100625 SIX4 SIX homeobox 4 -2.0009 0.0000
63218 ENSG00000277578 NA -2.0008 0.0000
63217 ENSG00000204961 PCDHA9 protocadherin alpha 9 -2.0006 0.0000
63216 ENSG00000250788 TUBB8P4 tubulin beta 8 class VIII pseudogene 4 -2.0004 0.0000
63215 ENSG00000213434 VTI1BP2 vesicle transport through interaction with t-SNAREs 1B pseudogene 2 -2.0004 0.0000
63214 ENSG00000198270 TMEM116 transmembrane protein 116 -2.0001 0.0000
63213 ENSG00000282909 family with sequence similarity 166, member A (FAM166A) pseudogene -2.0000 1.0000
63212 ENSG00000273863 tripartite motif containing 60 (TRIM60) pseudogene -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...