Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773668

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773668


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M295Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258600 novel transcript 3.1699 0.0000
2 ENSG00000259231 5-azacytidine induced 2 (AZI2) pseudogene 2.8074 0.0000
3 ENSG00000206639 Y RNA 2.5850 0.0000
4 ENSG00000234842 MTCO2P16 MT-CO2 pseudogene 16 2.5850 0.0000
5 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.5850 0.0000
6 ENSG00000229910 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 2.3219 0.0002
7 ENSG00000235735 RPL7AP72 ribosomal protein L7a pseudogene 72 2.3219 0.0000
8 ENSG00000242326 MCUR1P2 MCUR1 pseudogene 2 2.3219 0.0000
9 ENSG00000252220 RNU6-977P RNA, U6 small nuclear 977, pseudogene 2.3219 0.0000
10 ENSG00000253625 IGKV2-23 immunoglobulin kappa variable 2-23 (pseudogene) 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000252119 NA -2.1079 0.0000
63127 ENSG00000227009 FUNDC2P4 FUN14 domain containing 2 pseudogene 4 -2.1075 0.0000
63126 ENSG00000011007 ELOA elongin A -2.1074 0.0000
63125 ENSG00000185915 KLHL34 kelch like family member 34 -2.1073 0.0000
63124 ENSG00000162004 CCDC78 coiled-coil domain containing 78 -2.1070 0.0000
63123 ENSG00000254574 novel transcript -2.1068 0.0000
63122 ENSG00000116096 SPR sepiapterin reductase -2.1051 0.0000
63121 ENSG00000198794 SCAMP5 secretory carrier membrane protein 5 -2.1047 0.0000
63120 ENSG00000186715 MST1L macrophage stimulating 1 like -2.1047 0.0000
63119 ENSG00000244588 RAD21L1 RAD21 cohesin complex component like 1 -2.1047 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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