SHOGoiN Cell Methylome: GSM2773668

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773668


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M295Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258600 novel transcript 3.1699 0.0000
2 ENSG00000259231 5-azacytidine induced 2 (AZI2) pseudogene 2.8074 0.0000
3 ENSG00000206639 NA 2.5850 0.0000
4 ENSG00000234842 MTCO2P16 MT-CO2 pseudogene 16 2.5850 0.0000
5 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.5850 0.0000
6 ENSG00000229910 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 2.3219 0.0002
7 ENSG00000235735 RPL7AP72 ribosomal protein L7a pseudogene 72 2.3219 0.0000
8 ENSG00000242326 MCUR1P2 MCUR1 pseudogene 2 2.3219 0.0000
9 ENSG00000252220 RNU6-977P RNA, U6 small nuclear 977, pseudogene 2.3219 0.0000
10 ENSG00000253625 IGKV2-23 immunoglobulin kappa variable 2-23 (pseudogene) 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000253054 RNU7-77P RNA, U7 small nuclear 77 pseudogene -2.1774 0.0000
63340 ENSG00000269139 novel transcript, antisense to CTXN1 and TIMM44 -2.1771 0.0000
63339 ENSG00000214111 platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa pseudogene -2.1766 0.0000
63338 ENSG00000197763 TXNRD3 thioredoxin reductase 3 -2.1766 0.0000
63337 ENSG00000259369 ribosomal protein L19 (RPL19) pseudogene -2.1763 0.0000
63336 ENSG00000251664 PCDHA12 protocadherin alpha 12 -2.1760 0.0000
63335 ENSG00000096654 ZNF184 zinc finger protein 184 -2.1750 0.0000
63334 ENSG00000248527 MTATP6P1 MT-ATP6 pseudogene 1 -2.1747 0.0000
63333 ENSG00000254328 coiled-coil domain containing 72 (CCDC72) pseudogene -2.1740 0.0000
63332 ENSG00000226252 novel transcript -2.1737 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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