SHOGoiN Cell Methylome: GSM2773669

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773669


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M296Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236193 LINC01953 long intergenic non-protein coding RNA 1953 2.5850 0.0002
2 ENSG00000222560 RNU4-43P RNA, U4 small nuclear 43, pseudogene 2.0000 0.0000
3 ENSG00000250768 DPP3P1 dipeptidyl peptidase 3 pseudogene 1 2.0000 0.0058
5 ENSG00000174384 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 1.5850 0.0010
6 ENSG00000196620 UGT2B15 UDP glucuronosyltransferase family 2 member B15 1.5850 0.0010
7 ENSG00000235699 CXorf51B chromosome X open reading frame 51B 1.5850 0.0322
8 ENSG00000278825 RN7SL640P RNA, 7SL, cytoplasmic 640, pseudogene 1.5850 0.0322
9 ENSG00000230251 PHBP4 prohibitin pseudogene 4 1.4875 0.0000
10 ENSG00000264071 RN7SL531P RNA, 7SL, cytoplasmic 531, pseudogene 1.4387 0.0000
63332 ENSG00000139318 DUSP6 dual specificity phosphatase 6 -1.6617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63341 ENSG00000254221 PCDHGB1 protocadherin gamma subfamily B, 1 -1.6635 0.0000
63340 ENSG00000244998 novel transcript, antisense to PTP4A3 -1.6633 0.0000
63339 ENSG00000102878 HSF4 heat shock transcription factor 4 -1.6633 0.0000
63338 ENSG00000136352 NKX2-1 NK2 homeobox 1 -1.6632 0.0000
63337 ENSG00000177374 HIC1 HIC ZBTB transcriptional repressor 1 -1.6630 0.0000
63336 ENSG00000218089 DNAJA1P4 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 4 -1.6630 0.0000
63335 ENSG00000187514 PTMA prothymosin alpha -1.6630 0.0000
63334 ENSG00000206811 SNORA10 small nucleolar RNA, H/ACA box 10 -1.6624 0.0000
63333 ENSG00000200169 RNU5D-1 RNA, U5D small nuclear 1 -1.6621 0.0000
63332 ENSG00000139318 DUSP6 dual specificity phosphatase 6 -1.6617 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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