Human Omics database for
the Generation of iPS and Normal Cells
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Cell Taxonomy(Human cell)
Cell Taxonomy(C. Elegans cell)
Cell Taxonomy(Sea Urchin cell)
Transcriptome Sample(Single-cell)
Transcriptome Project(Single-cell)
Methylome Sample(Single-cell)
Methylome Project(Single-cell)
Cell Conversion(Differentiation)
Cell Conversion(Transdifferentiation)
Cell Marker(from literature)
Cell Image
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SHOGoiN Cell Methylome: GSM2773669
Methylation Profile
SHOGoiN Cell Id
Project Name
Project Id
Assay Id
Project
Assay
Source Cell
Technology
Data
Project Title
Assay Type
Source Cell Type
Source Organism
Source Tissue Or Organ
Assay Technology
Assay Detection Instrumentation
Data Type
GSM2773669
Profile download
7020007000000000000000-780
Sequence Read Archive
SRP074598
SRP074598_M296
Single-cell DNA methylome sequencing of human preimplantation embryos
Methylome
TE
Human
Early embryonic tissue
Bisulfite-Seq (PBAT)
HiSeq 2500
Sequence
Histogram (P-value of methylation rate)
Top 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-vaue
1
ENSG00000236193
LINC01953
long intergenic non-protein coding RNA 1953
2.5850
0.0002
2
ENSG00000222560
RNU4-43P
RNA, U4 small nuclear 43, pseudogene
2.0000
0.0000
3
ENSG00000250768
DPP3P1
DPP3 pseudogene 1
2.0000
0.0058
5
ENSG00000174384
PMS2P6
PMS1 homolog 2, mismatch repair system component pseudogene 6
1.5850
0.0010
6
ENSG00000196620
UGT2B15
UDP glucuronosyltransferase family 2 member B15
1.5850
0.0010
7
ENSG00000235699
CXorf51B
chromosome X open reading frame 51B
1.5850
0.0322
8
ENSG00000278825
RN7SL640P
RNA, 7SL, cytoplasmic 640, pseudogene
1.5850
0.0322
9
ENSG00000230251
PHBP4
prohibitin pseudogene 4
1.4875
0.0000
10
ENSG00000264071
RN7SL531P
RNA, 7SL, cytoplasmic 531, pseudogene
1.4387
0.0000
63119
ENSG00000125508
SRMS
src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
-1.6188
0.0000
Bottom 10 methylated genes
Rank
ENSG
Gene symbol
Description
M-value
P-value
63128
ENSG00000175536
LIPT2
lipoyl(octanoyl) transferase 2
-1.6205
0.0000
63127
ENSG00000254122
PCDHGB7
protocadherin gamma subfamily B, 7
-1.6205
0.0000
63126
ENSG00000267735
novel transcript, antisense to DNASE2
-1.6203
0.0000
63125
ENSG00000121039
RDH10
retinol dehydrogenase 10
-1.6202
0.0000
63124
ENSG00000229021
novel transcript
-1.6200
0.0000
63123
ENSG00000226237
GAS1RR
GAS1 adjacent regulatory RNA
-1.6199
0.0000
63122
ENSG00000138166
DUSP5
dual specificity phosphatase 5
-1.6193
0.0000
63121
ENSG00000171222
SCAND1
SCAN domain containing 1
-1.6192
0.0000
63120
ENSG00000272702
novel transcript
-1.6189
0.0000
63119
ENSG00000125508
SRMS
src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites
-1.6188
0.0000
SOM(Self Organization Map)
Expression around clicked position:
full
download
Rank
ENSG
Gene symbol
Description
M-value
P-value
full
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