Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773669

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773669


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M296Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236193 LINC01953 long intergenic non-protein coding RNA 1953 2.5850 0.0002
2 ENSG00000222560 RNU4-43P RNA, U4 small nuclear 43, pseudogene 2.0000 0.0000
3 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.0000 0.0058
5 ENSG00000174384 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 1.5850 0.0010
6 ENSG00000196620 UGT2B15 UDP glucuronosyltransferase family 2 member B15 1.5850 0.0010
7 ENSG00000235699 CXorf51B chromosome X open reading frame 51B 1.5850 0.0322
8 ENSG00000278825 RN7SL640P RNA, 7SL, cytoplasmic 640, pseudogene 1.5850 0.0322
9 ENSG00000230251 PHBP4 prohibitin pseudogene 4 1.4875 0.0000
10 ENSG00000264071 RN7SL531P RNA, 7SL, cytoplasmic 531, pseudogene 1.4387 0.0000
63119 ENSG00000125508 SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites -1.6188 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63128 ENSG00000175536 LIPT2 lipoyl(octanoyl) transferase 2 -1.6205 0.0000
63127 ENSG00000254122 PCDHGB7 protocadherin gamma subfamily B, 7 -1.6205 0.0000
63126 ENSG00000267735 novel transcript, antisense to DNASE2 -1.6203 0.0000
63125 ENSG00000121039 RDH10 retinol dehydrogenase 10 -1.6202 0.0000
63124 ENSG00000229021 novel transcript -1.6200 0.0000
63123 ENSG00000226237 GAS1RR GAS1 adjacent regulatory RNA -1.6199 0.0000
63122 ENSG00000138166 DUSP5 dual specificity phosphatase 5 -1.6193 0.0000
63121 ENSG00000171222 SCAND1 SCAN domain containing 1 -1.6192 0.0000
63120 ENSG00000272702 novel transcript -1.6189 0.0000
63119 ENSG00000125508 SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites -1.6188 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...