Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773669

Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project	Assay	Source Cell			Technology		Data
Methylation Profile	SHOGoiN Cell Id	Project Name	Project Id	Assay Id	Project Title	Assay Type	Source Cell Type	Source Organism	Source Tissue Or Organ	Assay Technology	Assay Detection Instrumentation	Data Type
GSM2773669 Profile download	7020007000000000000000-780	Sequence Read Archive	SRP074598	SRP074598_M296	Single-cell DNA methylome sequencing of human preimplantation embryos	Methylome	TE	Human	Early embryonic tissue	Bisulfite-Seq (PBAT)	HiSeq 2500	Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-vaue
1	ENSG00000236193	LINC01953	long intergenic non-protein coding RNA 1953	2.5850	0.0002
2	ENSG00000222560	RNU4-43P	RNA, U4 small nuclear 43, pseudogene	2.0000	0.0000
3	ENSG00000250768	DPP3P1	DPP3 pseudogene 1	2.0000	0.0058
5	ENSG00000174384	PMS2P6	PMS1 homolog 2, mismatch repair system component pseudogene 6	1.5850	0.0010
6	ENSG00000196620	UGT2B15	UDP glucuronosyltransferase family 2 member B15	1.5850	0.0010
7	ENSG00000235699	CXorf51B	chromosome X open reading frame 51B	1.5850	0.0322
8	ENSG00000278825	RN7SL640P	RNA, 7SL, cytoplasmic 640, pseudogene	1.5850	0.0322
9	ENSG00000230251	PHBP4	prohibitin pseudogene 4	1.4875	0.0000
10	ENSG00000264071	RN7SL531P	RNA, 7SL, cytoplasmic 531, pseudogene	1.4387	0.0000
63119	ENSG00000125508	SRMS	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	-1.6188	0.0000

Bottom 10 methylated genes

Rank	ENSG	Gene symbol	Description	M-value	P-value
63128	ENSG00000175536	LIPT2	lipoyl(octanoyl) transferase 2	-1.6205	0.0000
63127	ENSG00000254122	PCDHGB7	protocadherin gamma subfamily B, 7	-1.6205	0.0000
63126	ENSG00000267735		novel transcript, antisense to DNASE2	-1.6203	0.0000
63125	ENSG00000121039	RDH10	retinol dehydrogenase 10	-1.6202	0.0000
63124	ENSG00000229021		novel transcript	-1.6200	0.0000
63123	ENSG00000226237	GAS1RR	GAS1 adjacent regulatory RNA	-1.6199	0.0000
63122	ENSG00000138166	DUSP5	dual specificity phosphatase 5	-1.6193	0.0000
63121	ENSG00000171222	SCAND1	SCAN domain containing 1	-1.6192	0.0000
63120	ENSG00000272702		novel transcript	-1.6189	0.0000
63119	ENSG00000125508	SRMS	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	-1.6188	0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

Rank	ENSG	Gene symbol	Description	M-value	P-value

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