SHOGoiN Cell Methylome: GSM2773669
| Methylation Profile | SHOGoiN Cell Id | Project Name | Project Id | Assay Id | Project | Assay | Source Cell | Technology | Data | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Project Title | Assay Type | Source Cell Type | Source Organism | Source Tissue Or Organ | Assay Technology | Assay Detection Instrumentation | Data Type | |||||
 GSM2773669 Profile download | 7020007000000000000000-780 | Sequence Read Archive | SRP074598 | SRP074598_M296 | Single-cell DNA methylome sequencing of human preimplantation embryos | Methylome | TE | Human | Early embryonic tissue | Bisulfite-Seq (PBAT) | HiSeq 2500 | Sequence |
Histogram (P-value of methylation rate)
Top 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-vaue |
|---|---|---|---|---|---|
| 1 | ENSG00000236193 | LINC01953 | long intergenic non-protein coding RNA 1953 | 2.5850 | 0.0002 |
| 2 | ENSG00000222560 | RNU4-43P | RNA, U4 small nuclear 43, pseudogene | 2.0000 | 0.0000 |
| 3 | ENSG00000250768 | DPP3P1 | dipeptidyl peptidase 3 pseudogene 1 | 2.0000 | 0.0058 |
| 5 | ENSG00000174384 | PMS2P6 | PMS1 homolog 2, mismatch repair system component pseudogene 6 | 1.5850 | 0.0010 |
| 6 | ENSG00000196620 | UGT2B15 | UDP glucuronosyltransferase family 2 member B15 | 1.5850 | 0.0010 |
| 7 | ENSG00000235699 | CXorf51B | chromosome X open reading frame 51B | 1.5850 | 0.0322 |
| 8 | ENSG00000278825 | RN7SL640P | RNA, 7SL, cytoplasmic 640, pseudogene | 1.5850 | 0.0322 |
| 9 | ENSG00000230251 | PHBP4 | prohibitin pseudogene 4 | 1.4875 | 0.0000 |
| 10 | ENSG00000264071 | RN7SL531P | RNA, 7SL, cytoplasmic 531, pseudogene | 1.4387 | 0.0000 |
| 63332 | ENSG00000139318 | DUSP6 | dual specificity phosphatase 6 | -1.6617 | 0.0000 |
Bottom 10 methylated genes
| Rank | ENSG | Gene symbol | Description | M-value | P-value |
|---|---|---|---|---|---|
| 63341 | ENSG00000254221 | PCDHGB1 | protocadherin gamma subfamily B, 1 | -1.6635 | 0.0000 |
| 63340 | ENSG00000244998 | novel transcript, antisense to PTP4A3 | -1.6633 | 0.0000 | |
| 63339 | ENSG00000102878 | HSF4 | heat shock transcription factor 4 | -1.6633 | 0.0000 |
| 63338 | ENSG00000136352 | NKX2-1 | NK2 homeobox 1 | -1.6632 | 0.0000 |
| 63337 | ENSG00000177374 | HIC1 | HIC ZBTB transcriptional repressor 1 | -1.6630 | 0.0000 |
| 63336 | ENSG00000218089 | DNAJA1P4 | DnaJ heat shock protein family (Hsp40) member A1 pseudogene 4 | -1.6630 | 0.0000 |
| 63335 | ENSG00000187514 | PTMA | prothymosin alpha | -1.6630 | 0.0000 |
| 63334 | ENSG00000206811 | SNORA10 | small nucleolar RNA, H/ACA box 10 | -1.6624 | 0.0000 |
| 63333 | ENSG00000200169 | RNU5D-1 | RNA, U5D small nuclear 1 | -1.6621 | 0.0000 |
| 63332 | ENSG00000139318 | DUSP6 | dual specificity phosphatase 6 | -1.6617 | 0.0000 |
